GgaEX0027431 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C495]
Coordinates
chr14:2252290-2255595:+
Coord C1 exon
chr14:2252290-2252590
Coord A exon
chr14:2254066-2254228
Coord C2 exon
chr14:2255446-2255595
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACACCTTGCCTCTTTTTCAGCTT
3' ss Score
9.53
5' ss Seq
ACGGTACTA
5' ss Score
5.07
Exon sequences
Seq C1 exon
GATCGCAGAGAACAAACAGAGAGCCAGCTGGCAGGAGCCGAGCGCTGCCGCTGCGCTTTGATTGCTTCTAACACCAAAAACCAGAGTAGTGCTTTAAAAAAAAATGGCTTTCTTGATTTCTTTTATCTCCGATCCTGTATTAATGGGTCTGCTGTGTGCAGCAGTGCTGTTAGCTGTACTCTATTTTTCAACCGGCTCTAAAAATGCAGCGTTTAAATTGCCTCCTGGTCCAACTCCTCTTCCGATCATTGGTAACCTGCATTTGGTGGACATCAGAAGGCAAGATAAGTCACTAATGAAG
Seq A exon
CTTGCTGAAGAATACGGCCCGGTCTTCACCCTCCATTTTGGCTTCCAGAAAGTTGTGGTCCTGACTGGGTACGAAGTTGTGCGGGAGGCACTTGTGAACTACACAGAGGAGTTTGTAGACAGACCATCCATCCCAATATTTGACCAAATTCAGAATGGAAACG
Seq C2 exon
GTGTGTTCTTCTCCATTGGCGATCTGTGGAGGACAACGCGCAGGTTCACCGTCTCCAGCATGCGCAACCTCGGCATGGGGAAGCAGATGATGGAAGGGAAGGTTTGTGAGGAGCTTCACTTCCTCATTGAGAAGATCAAATCCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238-'3-1,'3-0,7-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.7=49.1)
A:
PF0006717=p450=FE(32.5=100)
C2:
PF0006717=p450=FE(30.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGCTGTTAGCTGTACT
R:
AGCTCCTCACAAACCTTCCCT
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]