BtaEX6111341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42309484-42310487:-
Coord C1 exon
chr25:42310305-42310487
Coord A exon
chr25:42309899-42310061
Coord C2 exon
chr25:42309484-42309633
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCCTCTCCCCACCAGCTC
3' ss Score
8.65
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GCCAGAATCATGGCCCTGCTGCTCCTGGCGCTGCTGGCGCTGCTGGCGCTCTGGGGGCTGCTTTGCGCCCGGGCCGGTACCCCAGGCCCAGCCCCCCGCTGGCCCCCGGGGCCGCGCCCCCTGCCCCTCGTCGGGAACCTCCACTTGCTGCGGGGGGCACAGCAGGACGAGGCGATGATGCAG
Seq A exon
CTCGGCAAACAGTATGGGCCGGTGTTCACTGTGCATCTTGGGCACCAGAAGACGGTGGTGCTGACCGGCTACGAGGCGGTGAAGGAGGCCCTGGTGGGCACCGGGCAGGAGCTGGCTGGCCGGCCCCCCATTGCCATCTTCCAGCTCATCAATGGAGGCGGGG
Seq C2 exon
GCGTCTTCTTCTCCTCAGGCCCACGCTGGCGGGCCGCCCGCCAGCTCACCGTACGTGCCCTCCACGGCCTGGGTGTGGGGAGGGCGCCCGTGGCCAACAAGGTCTTGCAGGAGCTGAGGTGCCTCACGGCGCAGCTGGACAGCTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701-'2-1,'2-0,3-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=42.6)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGGGCTGCTTTGC
R:
CTCAGCTCCTGCAAGACCTTG
Band lengths:
253-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]