GgaEX6012103 @ galGal3
Exon Skipping
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2270986-2273695:-
Coord C1 exon
chr14:2273483-2273695
Coord A exon
chr14:2272302-2272464
Coord C2 exon
chr14:2270986-2271135
Length
163 bp
Sequences
Splice sites
3' ss Seq
GATCTTTTCTCTCCTTGCAGATT
3' ss Score
12.8
5' ss Seq
ATGGTACGG
5' ss Score
8.21
Exon sequences
Seq C1 exon
GAGTGCAGAAGGGCAGGCTCCACCAGCATGGCTGCCCTCGTGCCCCTGCTCACCTGTGGGCTCTGCATGGTGCTTTTCATCGCCGCACTCCTCTGTGCTGTAAAAGGTTTGAAACGATCAGCTTCAAATTTGCCTCCTGGTCCGTTTCCTCTCCCCATCATCGGCAACCTGCACCTGCTGGACATCAGGAGGCAGGACAGGTCTCTGATGAAG
Seq A exon
ATTTCCGAGAAATATGGGCCAGTGTTCACTGTCCACCTGGGGATGCAGCAAGTGGTGGTGCTGAGCGGCTACGAGGCAGTGAAGGATGCACTTCTGAACACAGCGGATGTGTTTGCAGACAGACCCCCTATCCCCATCTTCCATCAGATCCAGCATGGAAATG
Seq C2 exon
GTGTGTTCTTCTCTTCCCAAGAGCTCTGGAAGACAACACGGAGGTTCACCTTGGCGGTTATGCGGGATCTGGGCATGGGGAAGCGGCTTGCGGAGGAAAGGATGCTCGAGGAGCTTCAGTTTCTCATTGAGCTGATCAAATCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-'1-1,'1-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.7=72.2)
A:
PF0006717=p450=FE(32.5=100)
C2:
PF0006717=p450=FE(30.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGGTGCTTTTCATCGC
R:
GAGCATCCTTTCCTCCGCAAG
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]