MmuEX6022059 @ mm10
Exon Skipping
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139352617-139354389:+
Coord C1 exon
chr5:139352617-139352829
Coord A exon
chr5:139353840-139354002
Coord C2 exon
chr5:139354240-139354389
Length
163 bp
Sequences
Splice sites
3' ss Seq
CACCTGTCTGTCCCCACCAGCTC
3' ss Score
7.42
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GAGCTGAGGATTTGCCATCCAGCTGTTCACATGGCTCTGCTGCTCCTGGGTGTCTGGGGGATCTTGCTACTTCTGGGGCTGTGGGGACTGCTCCAGGGCTGCACCCGGAGCCCCTCCCTGGCTCCTCGGTGGCCCCCTGGGCCTCGCCCTCTGCCGTTCCTGGGGAACCTGCATTTGCTGGGTGTGACCCAACAAGACCGGGCACTGATGGAG
Seq A exon
CTCTCAGAACGCTACGGGCCCATGTTCACAATCCATCTGGGATCTCAGAAGACCGTGGTGCTGTCGGGCTATGAGGTGGTGAGGGAGGCCTTGGTTGGAACCGGGCATGAGCTAGCCGACCGGCCCCCAATTCCCATCTTCCAGCACATCCAGCGAGGTGGGG
Seq C2 exon
GCATTTTCTTTTCTTCTGGAGCTCGCTGGAGGGCGGGTCGCCAATTCACGGTGCGCACACTGCAGAGCCTGGGTGTGCAACAGCCATCCATGGTGGGCAAGGTGCTGCAGGAGCTGGCCTGTCTTAAAGGACAGCTGGATAGCTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541-'0-1,'0-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=42.6)
A:
PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTACTTCTGGGGCTGTG
R:
CCATGGATGGCTGTTGCACA
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types