GgaEX0027431 @ galGal3
Exon Skipping
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2258505-2262208:+
Coord C1 exon
chr14:2258505-2259203
Coord A exon
chr14:2260679-2260841
Coord C2 exon
chr14:2262059-2262208
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACACCTTGCCTCTTTTTCAGCTT
3' ss Score
9.53
5' ss Seq
ACGGTACTA
5' ss Score
5.07
Exon sequences
Seq C1 exon
AGAGGAATGCCAAGCACCTTTTCCCATGTATATGTTCCTGCACACACATGCATGGGTTTGTAATTTGAAACTCTCTTTACTCCTGGACAGGCTTTGCAAACTGCTTAGACCACATTCTCCGAGGTGTTTAAAGAGGGTGGAGTATGCAGTATTTATTTAGGTACTCTACAAACCTTAATAAGAATCGAGTGCTTGTAGCGATCGCAGAGAACAAACAGAGAGCCAGCTGGCAGGAGCCGAGCGCTGCCGCTGCGCTTTGATTGCTTCTAACACCAAAAACCAGAGTAGTGCTTTAAAAAAAAATGGCTTTCTTGATTTCTTTTATCTCCGATCCTGTATTAATGGGTCTGCTGTGTGCAGCAGTGCTGTTAGCTGTACTCTATTTTTCAACCGGCTCTAAAAATGCAGCGTTTAAATTGCCTCCTGGTCCAACTCCTCTTCCGATCATTGGTAACCTGCATTTGGTGGACATCAGAAGGCAAGATAAGTCACTAATGAAG
Seq A exon
CTTGCTGAAGAATACGGCCCGGTCTTCACCCTCCATTTTGGCTTCCAGAAAGTTGTGGTCCTGACTGGGTACGAAGTTGTGCGGGAGGCACTTGTGAACTACACAGAGGAGTTTGTAGACAGACCATCCATCCCAATATTTGACCAAATTCAGAATGGAAACG
Seq C2 exon
GTGTGTTCTTCTCCATTGGCGATCTGTGGAGGACAACGCGCAGGTTCACCGTCTCCAGCATGCGCAACCTCGGCATGGGGAAGCAGATGATGGAAGGGAAGGTTTGTGAGGAGCTTCACTTCCTCATTGAGAAGATCAAATCCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.7=49.1)
A:
PF0006717=p450=FE(12.5=100)
C2:
PF0006717=p450=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGCTGTTAGCTGTACT
R:
AGCTCCTCACAAACCTTCCCT
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]