DreEX6015236 @ danRer10
Exon Skipping
Gene
ENSDARG00000009874 | cyp2k31
Description
cytochrome P450, family 2, subfamily k, polypeptide 31 [Source:ZFIN;Acc:ZDB-GENE-091113-2]
Coordinates
chr3:8392430-8394890:-
Coord C1 exon
chr3:8394640-8394890
Coord A exon
chr3:8392674-8392836
Coord C2 exon
chr3:8392430-8392579
Length
163 bp
Sequences
Splice sites
3' ss Seq
GACCTATCTTTCTCTTACAGCTG
3' ss Score
12.1
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGACCTAACGCAGTGATTGATCTGAGCACATGTATGATAGATCTCTGAACATGGCGCTAGTTGGAGCATTATTACCTGGACTGAGCTTTACTGTAGGTATGGTAGTTGCTGTCCTGCTGCTGTTTTTATTTATTTCTTTCTTCTCCAGCTCTCAGGATGAGGGAAAATATCCTCCAGGACCCAAACCTCTGCCACTGCTGGGGAACCTGCACATTCTGGACCTGAAGAACACCTACATGAGCCTCTGGAAG
Seq A exon
CTGTCTAAAACATATGGGCCAATTTACACAGTGCATATGGGCCCTAGAAAAGTGGTAGTCCTGTCAGGATACAAGACGGTCAAGGAGGCACTGGTGAATCTTTCAGAGGAGTTTGGAGACAGAGATATTTCACCCATATTCCACGATTTCAACCAGGGTTATG
Seq C2 exon
GAATTGTTTTTTCCAATGGTGAAAACTGGAAGGAAATGAGACGCTTTGCTCTGTCAAACCTACGAGACTTTGGAATGGGCAGAAAGAGAAGTGAAGAACTGATCATTGAAGAGATCAAACAATTAAAGGAGGAATTTGAGAAGTTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009874-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
80%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(14.0=35.1)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCGCTAGTTGGAGCATT
R:
TGACAGAGCAAAGCGTCTCAT
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]