BtaEX0022546 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39950378-39951733:+
Coord C1 exon
chr19:39950378-39950486
Coord A exon
chr19:39950642-39950859
Coord C2 exon
chr19:39951667-39951733
Length
218 bp
Sequences
Splice sites
3' ss Seq
TTCCACATATAACAAACCAGGGT
3' ss Score
1.92
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
GTGTTTTCTCTGGCTGGCTCTACCTTTAGCCTCCCTTCTACCCACATCTTTGGAACCCCCATGGGTGCCGTTAACCCCCTCCTCACCCAAGCCGAGAGCAGCCACACAG
Seq A exon
GGTACATCACTTTCACATCAAAACCCCTTGAGGCGGTGGGGCATGACCAGGAAGAATTACTACTACTCCATCTCACAAAAGCAAAAGGCAAGAGAAGATGAATGATTTGCCCAAGGCTGTTGAAGTAGGCAAAGGTAGAGCAGCAGCTGAAATTCTGGCTCCTCGGCTCCAAGACTACTTCTCCTACCACTGTAGCAAAGCTCCCTGCTGGCCTCTTA
Seq C2 exon
AGCCAGACCTGGAGGACTGCAGCTTCCGATGTCGGGGGACCTCACCCCAGGAGAGTCTGTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.061 C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015325fB4347
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTTCTCTGGCTGGCTCT
R:
AAGACAGACTCTCCTGGGGTG
Band lengths:
172-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development