BtaINT0093709 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011532 | MLLT6
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 [Source:HGNC Symbol;Acc:HGNC:7138]
Coordinates
chr19:39950378-39951733:+
Coord C1 exon
chr19:39950378-39950486
Coord A exon
chr19:39950487-39951666
Coord C2 exon
chr19:39951667-39951733
Length
1180 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GCCTCCCTTCTCCTTCCAAGAGC
3' ss Score
5.89
Exon sequences
Seq C1 exon
GTGTTTTCTCTGGCTGGCTCTACCTTTAGCCTCCCTTCTACCCACATCTTTGGAACCCCCATGGGTGCCGTTAACCCCCTCCTCACCCAAGCCGAGAGCAGCCACACAG
Seq A exon
GTATGTGAGTCCCTGACCCTGTTCCCCTTTCTTCACAAAGGGGCACCCCGTCACCTGCTTGTCACCCCGGAAAGGACTGGAGGGCTTTCTGGCTATCCCCCACCCTCTGGCCATTGCTGACCCTGCAAAAAAACATTCCACATATAACAAACCAGGGTACATCACTTTCACATCAAAACCCCTTGAGGCGGTGGGGCATGACCAGGAAGAATTACTACTACTCCATCTCACAAAAGCAAAAGGCAAGAGAAGATGAATGATTTGCCCAAGGCTGTTGAAGTAGGCAAAGGTAGAGCAGCAGCTGAAATTCTGGCTCCTCGGCTCCAAGACTACTTCTCCTACCACTGTAGCAAAGCTCCCTGCTGGCCTCTTAGTGAGTTCTTGATTGGCGATTATAGAGATCCCACTGGTTGGGCAACCGGCTCTCTGGGTATTCAGGAGTTAAGAGGGCGGATCGCAAGCACCTTCCTCCTAGTAGAGTGAACACAGCCCTAGAGAGCTGATTGGTGCAGAGGTACCACCTGGCTGGTTGAGGGGCGGGGCTTGCCATTTCAGGTAAGCCTTAAAGGGGCGAATCTGACAAAACTAAGAACCCTGCAGAGTAGATGACTGTATTTTCCAAAACCCAAATTGTAATTTTGTGGCTCAACATAGGGTTTTGCGGTCTAATTGTGAGTTTATTAATATAAAAGTCATATAAAATTATAATAACTACAGTAATTAAGGGTTTGCTACATGGCAGCTAAACTGTTCAGGTTAACACTTCACATTTATTACCTTATTCATAACAATCACTTCAGAGAGGTTGGTTTTAAGCCCCGCGGTCACATAGCAAGTATCCAAGTTCAACTCGGGACTGTCTAGGCCCCAAGTTCCTATGACTATGAAGTTATAAATTTTCCAGGAAAAAAAAAGTTGGGAGGAGAAGCTGAAAGCAGCAAGGATGCAGGAGCCTCTCTGCCTAGAGGAGGAGAAAGAGAGTTCATGATTTTGCCTCCCCAGGGGCTGGGATTTCAAACCAGGGCTCCCGAGAACTAGACCTGCCTGTCTGGGGGTTGGGAGATCCTGGGGAAAGAGGTCGGCGGTAAGGTCCCCGATCCTATACCCACTTCCCAGGCGGGGACTTTGGGGCCGACTGCACCTCTTCCTCACTGATCCCTGCCTCCCTTCTCCTTCCAAG
Seq C2 exon
AGCCAGACCTGGAGGACTGCAGCTTCCGATGTCGGGGGACCTCACCCCAGGAGAGTCTGTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011532:ENSBTAT00000015325:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development