RnoINT0092947 @ rn6
Intron Retention
Gene
ENSRNOG00000053285 | Mllt6
Description
MLLT6, PHD finger containing [Source:RGD Symbol;Acc:1306689]
Coordinates
chr10:85617564-85618712:+
Coord C1 exon
chr10:85617564-85617672
Coord A exon
chr10:85617673-85618645
Coord C2 exon
chr10:85618646-85618712
Length
973 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TGATCCTTGCTTTCTCCAAGAGC
3' ss Score
4.34
Exon sequences
Seq C1 exon
GTGTTTTCTCTGGCTGGCTCAACCTTCAGCCTCCCTGCATCCCACATCTTTGGAACCCCTATGGGCACTGTTAACCCCCTCCTCACCCAAGCGGAGAGCAGCCACACAG
Seq A exon
GTATGCTAGCCCCTGCGCCTGTTCCCCTTCTCAAGGTTGCTGCTGTAGAAAGTGAGAGTCTCCTCCCTCTGAATTTACCCCTCATACTGCAGGTCTTGGGGCACTTTCCTGGAAAACCAGTGCAGGGGCAGGCGAGGTGGTGACACTCTGTGTCACAGGAGAGACCTCAGTGCAGTGGTTAGAGAATGACAGCGCTAGTTCAGCCAATGGGGTCCCAGCCCAGTGTAAAACCCGCCCCCCACCTCTTGCTGTACAGTTGTAGTTGGGGGTCACAGGTCTGGCAGCTGGGCCTTCTGCTCTCCAGGTATTTAGGATAAGGGAGTGGGAGGCAGGTTCTCTTACCATTTCCCTAGAATCTACTCAGCCCCTGAGAGCCTAGCAGACACCGGGCTTGAGAGCCTGCGTGTGGCCTTAACTGCAGGCTGTCAGTTCAGGTAAGCGTTTCAGAGAAAGCAAATCTGGCTTCAGTTTTAGGATCCAGTTGGGCAAAACCAATGTGTTCTCTGTAGCCCAGAACCAGGGTTTTGTGGCCAACAGTTTTCTCATCTGCGTTTATGAATGTAAAAAGTCAAAGCTAATTATGGTAATACAATGATTAAGGGCTTGCTGAACCCTCCAGCCAAGCGCTCACTTTTGTGGCCTTATTTTAATCCTCATAAAAATCACCGGAGGTAGGCTGGTTACCAACACAAGGTCACCCAGCCAGCACCCAGGTTCAGTTTATCCAGGTTTATCCTGACCTCAGATTCTGTAGCTGAAAGATCTGGAAGCAGGCAGCGGGAACCCAGTGGAAAGGGAGGGGAAGAGAGCTTTGCTGAGATGGGACGCTGTGCTCAGCTCCTTGCCAACAGGAGCTCCTCCCCGCCTAGGATTGGGGGGTATTGAAGGAGGAGGTCTGTGGGAGCAGCCCCCACTTTCTGGGGTGGGGGGTGGTTCTGAGTCCTCTTTCTCCCTGATCCTTGCTTTCTCCAAG
Seq C2 exon
AGCCAGACCTAGAAGACTGCAGCTTCCGGTGTCATGGGACCTCCCCCCAGGAGAGTCTGTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053285:ENSRNOT00000092122:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]