GgaINT0143426 @ galGal3
Intron Retention
Description
NA
Coordinates
chr27:3904582-3908126:+
Coord C1 exon
chr27:3904582-3904699
Coord A exon
chr27:3904700-3908059
Coord C2 exon
chr27:3908060-3908126
Length
3360 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CTGTGCCTCTCCCCATCCAGAGC
3' ss Score
10.06
Exon sequences
Seq C1 exon
GTGTTCTCGCTGGCAGGTTCCACCTTCAGCCTCCCCTCCTCCCACATCTTTGGAAGCCCCCTCACATCTGGGCTGTCCATCAACCCGCTCTTAAATCAGTCGGAAAGCAGCCGGGCAG
Seq A exon
GTACGTGAATCAGAAGGTATGTGAGCCTGGGCTCCTGGAGGGATCTCCCTGGAGGAGTCAAGAGAACAGCATCCATAGTTGTCCATCTGCCCCCCCCCCCTTCCCCTGCTTGCTCCCATCCCACATATGTGCCATACAGGGCCAAGAGAGAGGGACGGTGGCTTTTCCTTCCCCCTGTTTGTCTTCACGAAGCATCCCCTCCAGCCCTGTATGAACACATTTGCTGCCATGCGATGCGTGTCATGGACACGTGCTGGGGAGGTGCAAGAGTGGAAATCTTTCCCTCCTTCCACACCCCAAAGGTTTCCCTTTCCCAAAGATTCGGTGCCTTTTTCCCGACCAAAGCCGTGCAAACCCACTGAGGACTGTTCTGAGCTTTTGCTTATCCAAAATCCTCCAAAGGGCCTTTTTGTTGTTGCTTCAAACACTCTCAATTTTCATCTCCCAGTCCCGTTTTGAGTTACTTTCTGCTCTTCCCCTTTGGCTTTCTCATGAAATGCAGCAGAATCCGCTGTTTTCCACTTCCAAACACGAACGTGCCAGGCACTGAATTGCTTACAACTGCTCATTTTTTCCCACCAAGGCAAATCCATTTTTCTTGGAAGGCTGCCTGGTTCATAAAGCAGGAAACTTGAAGCATCGTAAGGCTTTTTTATTCCAAGCAGACCCGGCCTGCCTTTCAGCTTGCTCTGGAGTTCAGCAAAAGCAGTTTGCAGTGCTCGTGCTCCCCTTGGCCAGAAATGCTGGCAGCTCAGCATGTTGGATGCTGAACCCGGTGGAGGTAAAGCTCTGCCCAGCATCACGTGGAGCAACAAGGGCTTGGAATGGCACGGCCCTCAGTAGGGATCACCCTGAGCTCTCTGGTTAATCCGACACCACTGTGCCCTTATTTGCCTTAACCCAGCGTGCAAGCCTGCATGTAAAGCATGAGGGAACACGTGTGCCTATGTGTGAGCTTTGCAAGCCTGTGGAAGTTGCCTGTGTGTGTGTCTGTGTGTGTCTCCGGCTCTGTTGTGTCTGCATGAGTGCAATGGGAAGGGAACCACCCGGCTGACACCAGCGGGGCCGGGGCTGCTGTATGGGAGCTGTGAGCCAGGAGTGCTCACCTGGAATGGAGGAGGGTTCCAGGAGTTCTTCCTCCCCTGTGGCCATCAACGAGGGAGAGGAGAGGACCCGCTGCCGCTTCCCCGGGCTGCTATTTAGGCGAGGTGCTGACAGCAGGAGGAAGCAAATGGGCTTTCGGGAGCAGCCGTGTGGTTCAGGCAGGGTGCAGAGGCTCAGCAGCCCGGGTTCAGCTCCAGCCCTGCAGCTGATGATGGATGAACCACGCAGGTGAAGCCCTCGGAGCTCTGTTTCCATCTCCAAAGTTGCTCTTTGGGTCTTTGGGATCCTTCTGGTTGCAGCCAGCCTTCAGAACATCTCCTGTTGTTTGTCACCTTTAAGGGTTCTCTGTCACCGTCTCCTCTCTGCAGCATTGACCCGGAGGCCATTAAGCCAAATTCCTTCTTTTTTTTTTCCAGTGGGATTAATTAACATGCATTAAACCTCCTTTGCAGCCATTTTCACTTAAAACTGTGACGACTGCTTTAATCCCGGGTCGTTAACAAGGTGGCTGTGACGTTTTAAGTGTTCCTGCCTTGTCTTTAATACAGATTACCTTTCCTGGGAGTGTCTGTAGACAGATCCCCTGCAGACATAGCTTTCACTGCACTGACATCGCAGCCCTTCACAGCTTTAATGTGATGTAGGGAAACGGTGTTATCCTGTCTTACAGATGGGGGAACCCAAAAGACTGTTATCACTGATGCAGGTTGATACCGGAGCGCCTTTGGCAATGCAAAAAGCCCAATTCTTATGTTCCCACTCCCTCAGCTCCTGTCTGGTTCATCCACCCGCTGCTTGTCCTGGATCCTGCCTCACCACGATGACAGCCCAAATGCATTTATCTCCCCCTGGCTGTTTTTGAGCCTCTTTTTTTTCCATACTCGTTGCCCTGCAAAGGGCTGTCTCTGTTTGATAACTCAGTTATCTCCATGCCTTCCAGCCGACAGAGTGGTGTTGGCCAGGAGATAGCTGAGTGTGGAGCTTCGTGCTATTTCAGAACCACGTGTATGCACACAGCCTCCCTGGTCTGCAAGAAAACAAGGCAGTAACAAGCAGACAGGCAGAGCTTGGCTGAGTGTTGGTCTGCTTGCATGTTAAACCTGTTGTGGCACAGCTGCATGCAATGGGATGTGTTCTGAAGGGCTGAGGTGGTCCTGGGGTGAAAATGATGTTGAGATGAACTGCTGTGGTGGGACTGCGCCCAGGAAGGCTCCATGCTTTGTGGCATCCCTAAACCTGGCCTTGTTGGCCTTGTCTCCCTGCAGCAGGACGTCACTGCTGGCTGGGAGCAGTGGCTTCTCCCCATATGGGCCAACCAGGTGTAGTTGGTGGCTGGGAAGGCACTGCCATGTGGGCGAAGGGCTGAGGGCTGTTCTCACTGCTACGAGCCCTGCTCTTGTTTGTTCTCAGCAGCAGAAAATATTGCTGGGAACCAATGCCCCGCTCAGGGCAGCGTAAATCACAGCGCTTTGCAGTGCTCCCTGCGGGAGACTTCCTGGATTCCTGCACATGAGAAACGTCTCCTCCTGTGTGAGGAAGAGGAGGGGCGGTGAGGCGCTGGGGTGGGCTGCCCTCACAACACCTGGGTTGCCCAGAGCAAGGCCAGCGTGTGCTTAAGGGCTGCAAACAGCAGATAAATCCTCCTCGTTCTCCATGACTGTTTGGATAGGAGATGTCTCACACACGTGCACTGCAGCATCGTGGGGTGGTGGGGCGCTGGAAACTGACTGCCAGAGAGCTGTGGGTGCCCCATCACTGGGGGGGCTGAGGGCCATGGATGTGCAGCCTGAGCTTGGGGGGGGGGGGGGAGGGGGAAGGGGGCAGCCCGATTAGGGCAGGGGGTTGGAACTGAATGATCTTTAAGGTGTCTTCCAACCGGAGCTGTCCTGTGATTGCACGATGTGGAAAGGCTGGAGGACCGCGCCTGGGTCGGGGAAGGGATGCTGAAGGCTCGGGAAAGCCAAGCGTGTCTGTGCCCATCCTCAGCCAAGCGAGCATCCCCCAGCACAGCCTCCTCCTTACCGGGACAGCCGGGCGGCACCCAGCCGTGACCTTCCCCGGGTGACACGCGGGGACACGCAGCCCCTCCTCCGTCGCCTCCCCCGGGGCGGGGGCTGTGCGGGCGCTGCGTGACGCAAAGGCTCGGCCGGGCTGCTCGGTGCTCCCATCTAGCGGGGACAGCCCGGCTGCGGGCACCTGCAGCGCCGAGCCGAGCGCCTATGAACGCGGTGCCTCTCTGTGCCTCTCCCCATCCAG
Seq C2 exon
AGCCCGACCTGGAGGACTGCAGTTTCGGCTGCCGAGGGACTTCGCCCCAGGAGAGTCTCTCTTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001574:ENSGALT00000002392:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]