BtaEX0023418 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30113539-30125975:-
Coord C1 exon
chr19:30125666-30125975
Coord A exon
chr19:30125506-30125573
Coord C2 exon
chr19:30113539-30113709
Length
68 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTCTCTTCCCCTCAGAGG
3' ss Score
9.76
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
CCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCCACAGACATGTCCTTCAAGAACAAGCTTTATGAACAGCATCTTGGAAAGTCCAACAACTTCCAGAAACCCAAACCTGCCAAGGGCAAGGCTGAGGCCCACTTCTCCCTCATTCACTATGCGGGCACTGTGGACTACAACATTACTGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGAGACGGTGGTCGGGCTGTACCAGAAGTCTTCAGTGAAGACTCTGGCTTTACTGTTCTCTGGCCCAGCATCTGGTGAAGCAG
Seq A exon
AGGGCGGTCCAAAGAAAGGTGGCAAGAAGAAGGGTTCTTCTTTCCAGACCGTGTCTGCTCTTTTCAGG
Seq C2 exon
GCAGCCATGATGGCTGAGGAGCTAAAGAAGGAGCAGGACACCAGTGCCCACCTGGAGCGGATGAAGAAGAACCTGGAGCAGACGGTGAAGGACCTGCAGCACCGCCTGGACGAAGCTGAGCAGCTGGCCCTGAAGGGCGGGAAGAAGCAGATCCAGAAGCTGGAGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204_MULTIEX2-17/36=16-C2
Average complexity
C3
Mappability confidence:
98%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.478 C2=0.684
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAACAAGGACCCCCTGA
R:
TCTTCTTCATCCGCTCCAGGT
Band lengths:
175-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development