BtaEX0023417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30116802-30129155:-
Coord C1 exon
chr19:30129057-30129155
Coord A exon
chr19:30128860-30128963
Coord C2 exon
chr19:30116802-30116998
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTAAATTCTATGTACCCAGAAA
3' ss Score
3.78
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCTTCTGGAGAAGTCTAGAGTCACTTTCCAGCTGAAGGCAGAAAGAAGCTACCATATTTTTTATCAGATCATGTCTAACAAGAAGCCAGAGCTAATTG
Seq A exon
AAATGCTCCTAATCACCACCAACCCATATGACTATGCCTACGTGAGTCAAGGGGAGATCACAGTCCCTAGCATTGATGACCAAGAAGAGTTGATGGCCACAGAT
Seq C2 exon
GCCAAGAGTGCCCTGGCCCATGCCCTGCAGTCAGCCCGTCATGACTGTGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAGGGCAAGGCCGAGCTGCAGAGGGCGATGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204_MULTIEX2-11/36=10-30
Average complexity
C3
Mappability confidence:
97%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.515
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(30.1=42.4),PF0003816=Filament=FE(23.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACTTTCCAGCTGAAGGC
R:
GTCCGTCTCGTACTTGGTCCT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development