RnoEX0057043 @ rn6
Exon Skipping
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33652690-33653800:-
Coord C1 exon
chr15:33653702-33653800
Coord A exon
chr15:33653376-33653479
Coord C2 exon
chr15:33652690-33652828
Length
104 bp
Sequences
Splice sites
3' ss Seq
CACATTTTTTCCATTCTTAGACA
3' ss Score
7.88
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAATCCAGGGTTATTTTCCAGCTGAAAGCAGAAAGAGATTATCACATTTTCTACCAAATCCTGTCTAATAAAAAGCCTGAGCTTCTAG
Seq A exon
ACATGCTGCTGATCACCAACAACCCCTACGATTATGCGTTCATCTCCCAGGGAGAGACGACTGTGGCCTCAATAGATGACTCTGAAGAGCTCATGGCCACCGAT
Seq C2 exon
AGCGCCTTTGATGTGCTGGGCTTCACTCCAGAAGAGAAGAACTCCATTTACAAGCTGACAGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAACAGAAGCAGAGGGAGGAGCAGGCAGAGCCAGACGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.298
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAATCCAGGGTTATTTTCCA
R:
GGCTCTGCCTGCTCCTCC
Band lengths:
218-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]