BtaEX6051730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21328500-21329712:+
Coord C1 exon
chr10:21328500-21328598
Coord A exon
chr10:21328835-21328938
Coord C2 exon
chr10:21329574-21329712
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCCCCCCACCCCCAGACA
3' ss Score
10.09
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAATCCAGAGTTATTTTCCAGCTGAAAGCAGAGAGAGATTATCATATTTTCTACCAAATCCTGTCCAACAAAAAGCCTGAGCTGCTGG
Seq A exon
ACATGCTGCTGATCACCAACAACCCCTATGACTATGCATTCATCTCCCAAGGAGAGACCACTGTGGCCTCAATTGATGACGCTGAAGAGCTCATGGCCACTGAT
Seq C2 exon
AACGCCTTTGACGTGCTGGGCTTCACTACAGAGGAGAAGAACTCCATGTACAAGCTGACGGGCGCCATCATGCACTTTGGAAACATGAAGTTCAAACTGAAGCAGCGAGAGGAGCAGGCCGAGCCTGACGGCACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703-'14-13,'14-11,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.234
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAGTTATTTTCCAGCTGA
R:
GCTCGGCCTGCTCCTCTC
Band lengths:
210-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]