RnoEX0056937 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53746179-53746707:+
Coord C1 exon
chr10:53746179-53746277
Coord A exon
chr10:53746345-53746451
Coord C2 exon
chr10:53746569-53746707
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTCTANNCCTATGTACCCAGAAA
3' ss Score
0
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCTTCTGGAGAAGTCTAGAGTCACCTTCCAGCTAAAAGCTGAGAGAAGCTACCATATTTTTTACCAGATCATGTCTAACAAGAAGCCAGATCTAATTG
Seq A exon
AAATGCTCCTGATCACCACCAACCCATACGACTACGCCTTTGTCAGTCAGGGGGAGATCACAGTGCCCAGCATTGATGACNNCCAAGAAGAGTTGATGGCCACAGAT
Seq C2 exon
AGTGCCATTGATATTCTGGGCTTCACTTCTGATGAAAGAGTCTCCATCTATAAGCTCACGGGGGCTGTGATGCATTATGGGAACATGAAGTTCAAGCAGAAGCAACGTGAGGAGCAGGCTGAGCCGGATGGCACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX1-37/41=36-38
Average complexity
S
Mappability confidence:
93%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.277
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(5.1=100)
C2:
PF0006316=Myosin_head=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAAGTCTAGAGTCACCT
R:
CTCAGCCTGCTCCTCACGTT
Band lengths:
218-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]