DreEX6026970 @ danRer10
Exon Skipping
Gene
ENSDARG00000079782 | vmhcl
Description
ventricular myosin heavy chain-like [Source:ZFIN;Acc:ZDB-GENE-061027-393]
Coordinates
chr2:24629434-24630514:-
Coord C1 exon
chr2:24630416-24630514
Coord A exon
chr2:24629660-24629763
Coord C2 exon
chr2:24629434-24629572
Length
104 bp
Sequences
Splice sites
3' ss Seq
TCTTGTAAACTGTAAAACAGAGA
3' ss Score
2.12
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ATCTCCTGGAGAAGTCCCGTGTCACCTTTCAGTTGAAGGCTGAAAGAGACTATCACATCTTTTATCAAATCTTATCCAACAAAAAACCTGAAATCCTTG
Seq A exon
AGATGTTACTAGTGACATCAAACCCCTATGACTACGCATTCATCTCTCAGGGAGAGACCACAGTTCCCTCCATTGATGATTCTGATGAGTTAATGGCAACTGAC
Seq C2 exon
AGTGCCTTTGATATATTGGGCTTCACACAAGAAGAAAAGAACTCTGTGTACAAGTTAACTGGAGCCATTATGCATTACGGCAATATGAAGTTCAAGCAGAAGCAGCGAGAGGAACAGGCTGAAGCTGATGGAACTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079782-'13-17,'13-14,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.255
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
PF0006316=Myosin_head=FE(5.0=100)
C2:
PF0006316=Myosin_head=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCTGGAGAAGTCCCGTG
R:
AGTTCCATCAGCTTCAGCCTG
Band lengths:
234-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]