Special

BtaEX0023429 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28708761-28720456:-
Coord C1 exon
chr19:28720342-28720456
Coord A exon
chr19:28716250-28716312
Coord C2 exon
chr19:28708761-28708954
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTTTCTCTGCTTTAGAGA
3' ss Score
9.84
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGGACTACAAGGCAGACGAGTGGCTGATGAAGAACATGGACCCCCTGAATGACAACGTGGCCACCCTCCTGCACCAGTCCTCTGACAGATTCGTGGCAGAGCTCTGGAAGGATG
Seq A exon
AGATTCAGAATATTCAGAGAGCTTCTTTCTATGACAGTGTTTCTGGTCTTCATGAGCCACCAG
Seq C2 exon
TGGACCGGATCGTGGGTCTGGATCAGGTCACGGGGATGACGGAGACGGCATTCGGCTCCGCCTATAAAACCAAGAAGGGCATGTTCCGCACTGTCGGGCAGCTCTACAAAGAATCGCTCACCAAGCTGATGGCGACGCTCCGGAACACCAACCCGAACTTCGTGCGCTGCATCATCCCAAATCACGAGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (No Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
PF0006316=Myosin_head=FE(3.0=100)
C2:
PF0006316=Myosin_head=FE(9.3=100)


Main Inclusion Isoform:
ENSBTAT00000028188fB4516


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCAGTCCTCTGACAGAT
R:
CGGAACATGCCCTTCTTGGTT
Band lengths:
133-196
Functional annotations
There are 2 annotated functions for this event
PMID: 18060863
In contrast to any of the previously described isoforms of nonmuscle myosin 2 (NM II); II-A, II-B0, II-B1, II-C0 and II-C1, or to smooth muscle myosin, the actin-activated MgATPase activity of nonmuscle heavy meromyosin (HMM) II-B2 (formed by inclusion of HsaEX0040948) is not significantly increased from a low, basal level by phosphorylation of the 20kDa myosin light chain (MLC-20). Moreover, although HMM II-B2 can bind to actin in the absence of ATP and is released in its presence, it cannot propel actin in the sliding actin filament assay following MLC-20 phosphorylation. Unlike HMM II-B2, the actin-activated MgATPase activity of a chimeric HMM with the 21-amino acid II-B2 sequence inserted into the homologous location in the heavy chain of HMM II-C is increased following MLC-20 phosphorylation. This indicates that the effect of the II-B2 insert is myosin heavy chain specific.
PMID: 16481398
The B2-inserted isoform, which contains an insert of 21 amino acids (MmuEX0030347) near the actin-binding region (loop 2), is important for postnatal development of cerebellar Purkinje cells. Deletion of the B2 alternative exon results in abnormal development of cerebellar Purkinje cells. Cells lacking the B2-inserted isoform show reduced numbers of dendritic spines and branches. Some of the B2-ablated Purkinje cells are misplaced in the cerebellar molecular layer. All of the B2-ablated mice demonstrated impaired motor coordination.


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development