GgaEX0001305 @ galGal3
Exon Skipping
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1711444-1715289:-
Coord C1 exon
chr18:1715175-1715289
Coord A exon
chr18:1714075-1714137
Coord C2 exon
chr18:1711444-1711637
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTTTCTCTGCCTTAGAGA
3' ss Score
9.51
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTAGACTACAAGGCAGATGAGTGGTTGATGAAGAACATGGACCCACTGAATGACAACGTGGCTACACTCCTGCACCAGTCTTCTGACAAATTTGTTGCAGAGCTTTGGAAGGATG
Seq A exon
AGATTCAGAATATTCAGAGAGCCTGTTTCTATGACAATATTACTGGTCTTCATGATCCACCAG
Seq C2 exon
TGGATCGTATCGTGGGTCTGGATCAGGTCACTGGAATAACAGAGACTGCTTTTGGCTCTGCATACAAGACCAAGAAGGGCATGTTTCGTACTGTTGGGCAGCTGTACAAAGAATCTCTCACCAAGCTGATGGCAACGCTCCGAAACACCAATCCCAATTTTGTTCGCTGCATCATTCCAAATCACGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.8=100)
A:
PF0006316=Myosin_head=FE(3.1=100)
C2:
PF0006316=Myosin_head=FE(9.8=100)


Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCACCAGTCTTCTGACA
R:
ACGAAACATGCCCTTCTTGGT
Band lengths:
137-200
Functional annotations
There are 2 annotated functions for this event
PMID: 18060863
In contrast to any of the previously described isoforms of nonmuscle myosin 2 (NM II); II-A, II-B0, II-B1, II-C0 and II-C1, or to smooth muscle myosin, the actin-activated MgATPase activity of nonmuscle heavy meromyosin (HMM) II-B2 (formed by inclusion of HsaEX0040948) is not significantly increased from a low, basal level by phosphorylation of the 20kDa myosin light chain (MLC-20). Moreover, although HMM II-B2 can bind to actin in the absence of ATP and is released in its presence, it cannot propel actin in the sliding actin filament assay following MLC-20 phosphorylation. Unlike HMM II-B2, the actin-activated MgATPase activity of a chimeric HMM with the 21-amino acid II-B2 sequence inserted into the homologous location in the heavy chain of HMM II-C is increased following MLC-20 phosphorylation. This indicates that the effect of the II-B2 insert is myosin heavy chain specific.
PMID: 16481398
The B2-inserted isoform, which contains an insert of 21 amino acids (MmuEX0030347) near the actin-binding region (loop 2), is important for postnatal development of cerebellar Purkinje cells. Deletion of the B2 alternative exon results in abnormal development of cerebellar Purkinje cells. Cells lacking the B2-inserted isoform show reduced numbers of dendritic spines and branches. Some of the B2-ablated Purkinje cells are misplaced in the cerebellar molecular layer. All of the B2-ablated mice demonstrated impaired motor coordination.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]