BtaEX0023435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002580 | MYH14
Description
myosin, heavy chain 14, non-muscle [Source:HGNC Symbol;Acc:HGNC:23212]
Coordinates
chr18:56907285-56911379:+
Coord C1 exon
chr18:56907285-56907399
Coord A exon
chr18:56909494-56909616
Coord C2 exon
chr18:56911192-56911379
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCACCGCCCCCCCAGAAC
3' ss Score
9.62
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GTCGACTACAAAGCCAACGAGTGGCTGATGAAAAACATGGACCCTCTGAATGACAACGTCGCAACCCTGCTCCACCAGAGCACAGACCGGCTGACGGCAGAGATCTGGAAAGACG
Seq A exon
AACACGGGGGCTTGCAGCAGTTCTCTTTCCTTGGCTCCTTCCCACCGTCGCCCCCAGGATCTTCAGGGAGGCACAGCTCTGCCATTTCTCCATCAGGGGGTGGGTGTTGCTGTGCATCAACGG
Seq C2 exon
TGGAGGGCATCGTGGGGCTGGAGCAAGTGAGCAGCCTTGGGGATGGCCCGCCTGGTGGCCGCCCGCGCCGGGGCATGTTCCGGACAGTGGGACAACTCTACAAGGAGTCCCTGAGCCGCCTCATGGCCACACTCAGCAACACCAACCCCAGCTTCGTCCGCTGCATCATCCCCAACCATGAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002580_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.452 C2=0.254
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGAATGACAACGTCGCA
R:
TCATGGTTGGGGATGATGCAG
Band lengths:
254-377
Functional annotations
There are 1 annotated functions for this event
PMID: 19240025
An isoform of non-muscle myosin II-C (NM II-C), called NM II-C2, is generated by inclusion of a casette exon, C2 (MmuEX0030353 in mouse, HsaEX0040957 in humans), encoding 41 amino acids in mice (33 amino acids in humans). The 41 amino acids are inserted into loop 2 of the NM II-C heavy chain within the actin binding region. Unlike most vertebrate non-muscle and smooth muscle myosin IIs, baculovirus-expressed mouse heavy meromyosin (HMM) II-C2 demonstrates no requirement for regulatory myosin light chain (MLC(20)) phosphorylation for maximum actin-activated MgATPase activity or maximum in vitro motility as measured by the sliding actin filament assay. In contrast, noninserted HMM II-C0 and another alternatively spliced isoform HMM II-C1, which contains 8 amino acids inserted into loop 1, are dependent on MLC(20) phosphorylation for both actin-activated MgATPase activity and in vitro motility. HMM II-C1C2, which contains both the C1 and C2 inserts, does not require MLC(20) phosphorylation for full activity similar to HMM II-C2. These constitutively active C2-inserted isoforms of NM II-C are expressed only in neuronal tissue. This is in contrast to NM II-C1 and NM II-C0, both of which are ubiquitously expressed. Full-length NM II-C2-GFP expressed in COS-7 cells localizes to filaments in interphase cells and to the cytokinetic ring in dividing cells.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development