BtaEX0023514 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012675 | MYO19
Description
myosin XIX [Source:HGNC Symbol;Acc:HGNC:26234]
Coordinates
chr19:13167473-13168242:-
Coord C1 exon
chr19:13168121-13168242
Coord A exon
chr19:13167856-13167969
Coord C2 exon
chr19:13167473-13167649
Length
114 bp
Sequences
Splice sites
3' ss Seq
CGACTGCCCTCCACCCCCAGGAG
3' ss Score
9.57
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
Exon sequences
Seq C1 exon
GCCTGCTGGACGTGTACGGGTTTGAGTCGTTCCCCAACAACAGCCTGGAGCAGCTCTGCATCAACTACGCCAACGAGAAGCTGCAGCAGCACTTCGTGGCTCACTACCTCCGGGCCCAGCAG
Seq A exon
GAGGAGTATGCAATGGAGGGCCTGGCGTGGTCGTTTGTCAGCTACCAGGACAACCAGCCCTGCTTGGATCTCATCGAGGGGAGCCCCGTCAGCATCTGCTCCCTCATAAACGAG
Seq C2 exon
GAGTGCCGCCTTAATCGGCCAAGCAGCGCAGCCCAGCTCCAGACGCGCATCGAGAGCGCCCTGACCGGCCACCCCCGCCTGGGGCGCGACAGGCTGAGCCCGGAGCCCAGCTTCATTGTGCTGCATTACGCGGGGCCCGTGCGGTACCGCACCGCGGGCCTGGTGGAGAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012675-'22-30,'22-29,23-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.220
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.8=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAACTACGCCAACGAGA
R:
CTTGTTCTTCTCCACCAGGCC
Band lengths:
242-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development