MmuEX6088398 @ mm10
Exon Skipping
Gene
ENSMUSG00000020527 | Myo19
Description
myosin XIX [Source:MGI Symbol;Acc:MGI:1913446]
Coordinates
chr11:84900196-84901018:+
Coord C1 exon
chr11:84900196-84900317
Coord A exon
chr11:84900474-84900587
Coord C2 exon
chr11:84900842-84901018
Length
114 bp
Sequences
Splice sites
3' ss Seq
CATCCCTGCTCCATCCCTAGGAG
3' ss Score
10.5
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGCTGCTAGATGTGTATGGGTTTGAGTCATTTCCTAATAACAGTTTGGAACAGCTGTGCATCAACTATGCCAATGAGAAGCTACAGCAGCACTTCGTGGCTCACTACCTCAGGGCCCAGCAG
Seq A exon
GAGGAGTACGAAGTTGAGGGCCTGGAGTGGTCATTTGTCAACTACCAGGACAACCAGACCTGCTTAGATCTCCTTGAAGGGAGCCCCATCAGCATCTGTTCCCTCATAAATGAG
Seq C2 exon
GAATGCCGCCTTAACCGGCCAAGCAGTGCAGCACAACTACAGACGCGCATCGAGAGCACGCTGGCAGGACGGCCCTGCCTGGGCCATAACAAGCTCAGCCGGGAGCCCAGCTTCGTGGTTGTGCATTTCGCGGGACCTGTACGGTACCACACAGCCGGCCTGGTGGAAAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020527-'22-31,'22-27,33-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.1=100)
A:
PF0006316=Myosin_head=FE(5.7=100)
C2:
PF0006316=Myosin_head=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGCTGTGCATCAACT
R:
TTGTTCTTTTCCACCAGGCCG
Band lengths:
253-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types