BtaEX0024064 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015986 | NDE1
Description
Bos taurus nudE nuclear distribution gene E homolog 1 (A. nidulans) (NDE1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100321]
Coordinates
chr25:14214134-14237237:+
Coord C1 exon
chr25:14214134-14214285
Coord A exon
chr25:14215114-14215226
Coord C2 exon
chr25:14234249-14237237
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTGCTCTGTCTGAAGGTT
3' ss Score
6.99
5' ss Seq
GAGGCGAGC
5' ss Score
0.95
Exon sequences
Seq C1 exon
GCCCTGGAGTCCAAACTTGCTTCCTGCCGGAACTTCGTGTACGATCAGTCCCCAGGCCGAGCCAGTGGCCCAGCCTCAGGGCGGGGGAGCAAAAACAGAGACAGCGTGGACAGGCGGCCCGGCGGCAGCAACGTGCCTCTCGGTGACAAAGG
Seq A exon
GTTGGGAAAACGCCTGGAGTTTGGGAAGCCGTCGTCGAATGTTTCCTCACCGTCGCTGCCGTCAGCCCAGGGTGTAGTCAAGATGTTGCTTTAGGAAAGCCACGGAAGCCGAG
Seq C2 exon
GTTGGACACCAGTTGTCGCTGGTTGTCCAAATCGACGACCAGGTCGTCCAGCTCCTGCTGAAGCCTGTTCTTGGTCTTTTCCAGTTTGTCATAAGCAGCTGCCTTCTCCTCGTACTGCTGGGTCAGGCTTTCGATTTCCTTCTGGAACTTCTTCTTACCCTCTTCCAGCAATTCCACGGTGCTGGCAAAGTCCTGCAGCTTCTTCTTCGAGTCGGAGAGCTGAAAAGGCAGTGTCCAGGGTGGGATGAGAGGAGGCGGGGATAAGGGAGTCCCAGCCCTGTGCCCCTGAGAAGCCACGACCATCATTGAATAAAATCAACAGCAGGGGGAGCTGGTGAGCCAAGCAAAATGGCACCATGGAAGAAACTCAACAGCACGGGGAGCCAGTGAGTCAAGCAAAATGGTGCCACCGTTCTATCACAATCACATCCGAGCCACTGATCTACCCTCCAGGGCAAAGACACGCAGTGGGCACCTGGATGTTCAGGGTTGAGATGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015986_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=0.677 C2=NA
Domain overlap (PFAM):
C1:
PF048808=NUDE_C=FE(25.1=100)
A:
PF048808=NUDE_C=PD(8.0=50.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGTACGATCAGTCCCCAG
R:
GAAAGCCTGACCCAGCAGTAC
Band lengths:
250-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development