BtaEX0023430 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14218281-14227142:-
Coord C1 exon
chr25:14226970-14227142
Coord A exon
chr25:14221620-14221658
Coord C2 exon
chr25:14218281-14218413
Length
39 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCTCTCTGTTTCAGAGC
3' ss Score
12.94
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GCCGAGAAAGGAAACCTGAGGGTCAAGCAACTCAAGAGGCAGCTGGAGGAGGCGGAGGAGGAGTCCCAGCGCATCAATGCCAACCGCAGGAAACTGCAGCGTGAGCTGGACGAGGCCACGGAGAGCAACGAGGCCATGGGCCGCGAGGTGACGGCGCTCAAGAGCAAGCTCAG
Seq A exon
AGCCCCCCTCCCCCAGGAAACTCCGCAATGACTCACCAG
Seq C2 exon
GCGAGGGAACGAGACCTCTTTTGTTCCCACAAGAAGGTCTGGAGGACGTAGAGTTATTGAGAACGCAGATGGGTCTGAGGAGGAAATGGACGCTCGCGATGCTGACTTCAACGGAACCAAAGCCAGTGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
PF0157614=Myosin_tail_1=PD(0.1=9.1)
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Main Inclusion Isoform:
ENSBTAT00000035455fB4517
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGGCGCTCAAGAG
R:
AGCGTCCATTTCCTCCTCAGA
Band lengths:
121-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development