GgaEX0009273 @ galGal4
Exon Skipping
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7557638-7562428:-
Coord C1 exon
chr14:7562256-7562428
Coord A exon
chr14:7561116-7561147
Coord C2 exon
chr14:7557638-7558306
Length
32 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTATCTCTGTTTCAGAGG
3' ss Score
9.87
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCCGAGAAGGGCAACCTACGGCTCAAGCAACTGAAAAGGCAGCTGGAGGAGGCTGAGGAAGAGTCTCAGCGTATCAACGCAAACCGCAGGAAGCTGCAGAGAGAGCTAGATGAAGCTACTGAGAGCAACGATGCCCTGGGACGGGAGGTTGCAGCACTGAAGAGCAAGCTAAG
Seq A exon
AGGGACACAGGAACCTTCGCATGACTAAGCAG
Seq C2 exon
GAGGGGAAATGAACCAGTATCTTTTGCCCCACCACGCAGATCTGGAGGCAGAAGAGTAATTGAGAATGCAACAGATGGAGGTGAAGAAGAAATTGATGGAAGAGATGGAGATTTCAATGGAAAAGCCAGTGAATAAACACGCTTAAAATTGCACTGCAGCAAGGGGAGGGAGGATGATATTTAGCACTGTTTAAGTCTACTCTTAGTGTCAAGGTCACACACACCCACTCCTCTGATGATGATGAAAGCACAACTGCCTTGTCTCCAATGTATAGGTTCATGATAAAAGTACTCCAGAACTTTCTTCATGAAATGTTTTTTGAAAAGTTTTGTTATAAATTCAGAGTAATTCACGAAGAATCTTCCAGAAAGTGAGTTCCAGTAGTTCAATTTAAATCTCAGTGAACTGAAGTTTACAAAGGATTTGTAGGACTGTTGCAGGAAAAAAAAAGGCATTGGTCAGTTAATCTTTTCTTAAACTTTCATTTTGTCTTAAGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
PF0157614=Myosin_tail_1=PD(0.1=10.0)
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Main Inclusion Isoform:
ENSGALT00000010534fB1013
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCTGCAGAGAGAGCTA
R:
CGTGGTGGGGCAAAAGATACT
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]