GgaINT1018551 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7557638-7562428:-
Coord C1 exon
chr14:7562256-7562428
Coord A exon
chr14:7558307-7562255
Coord C2 exon
chr14:7557638-7558306
Length
3949 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TTTTTATTTTGTTACTGCAGGAG
3' ss Score
8.36
Exon sequences
Seq C1 exon
GCCGAGAAGGGCAACCTACGGCTCAAGCAACTGAAAAGGCAGCTGGAGGAGGCTGAGGAAGAGTCTCAGCGTATCAACGCAAACCGCAGGAAGCTGCAGAGAGAGCTAGATGAAGCTACTGAGAGCAACGATGCCCTGGGACGGGAGGTTGCAGCACTGAAGAGCAAGCTAAG
Seq A exon
GTAGAGTGCCTTTGTTTGAGAAAAATTGAAATTTAGTATCAAACTAAAGAAGTAAAAAATAAAATAGTTTAGTCAAGTAACAATCAGACACCGATAACGAATGCAAGGTGTAACTTTGCAGTATGAGCTTGGCAAATGCAACAATAGGCCAAAGTCAGAAGGTGAAGTGCATATCATGGACTGCAGTAGTCTCAGGATCTTAGCTGTGAGAGTAACAACTGTGACAACGTGGCATAGGCCTTACTACTTTTCTATCTGAAGCTTCTGATGGCTTAACTAGGAACAGAATTAGGCTTGGTTGCTTTTGAAAATACTCCTATGGCTGTATGTATTTATTTCTACAGTTACAAATGGGTAGAAATGGTCATGCTTTTCATACTTACGCACATGCACAATTCACATGTAATGACTGTGATAAGTCTTGCACATCTCCATAGGCAGCAAAAGGCAAAGAACATTATACAACTCTCATTCAAAAGTTTCTGGACCTCACCTTTCCTTATATAGGGTCATTAGAGCAAGGAAAGACCAAAATATTCTTTTGCACTTTCCTTATGAAAACTGGCTGGGAAAAAGATAAAAGGTGTGATCAGTCAGATACATACCCGAGTTTTCCTGCACTTGTTGGGTCTGAAAACACTAATCACTGAAACACAGGCTGACTTGATTTATAGGAAATTTCTGTATCTGCTTCATCAAACTGTTGAACTCTGCTTTCTACCTAAAAACAAAAAGCAATTCAAATGAAACTAAAGCACCTGCCTAGTTGTGTTCTTGCTGCTGTAGTTGAATTTTGCCATTGACATGCATGCACCTTCAGATGTAGATACTTAATTCAAAGCCAAGAGTTAGGGATGTGGCAGCCTTTTCTATTAGCACCACCTCGGTTGGTACACACTACTGGCTGCATTACAAAATAGCTCTGCATCCAGCCCTTTTTACATAGAAAAGGATATTTACATTGAATAGCAGATTATTTTTGTTTGACCTGAATGTACTGTAATTGGCGGTAATGTACTTTGTTTAATTATTTAAAAGTAATATACCTACCTCTGATCATGACTATGTGCTTAGTATAACTGCCCGGGATTCTTTATCTCTGTTTCAGAGGGACACAGGAACCTTCGCATGACTAAGCAGGTACCATGCCTTCAACTTTGCAGCTAGCTTGTGTTGTACAAATTCCATTTTCTTTGGCCCAAGTAAAAATTATGTGAGGTTTCTGCAAACTGTGAAGGCTTGGATATCTTGGCATTAAATTTTTTTTTTTAAAGAGAGACAAATATTACAATAATCTAGCTACTATCAGCTGTTCAGTGATACAACTTTCTTACAAGTAGGCTATGTACTGACGTAGACTTACCAGTGTTGCATTCTCACTTCTTATAAGCTCTACCAACTGAGTACCCAATAAAGTACTCTGACATTTTCTGCATGTCAATTGTCTTTTTTTTTTTTTTGCACCTATTTACAGCCAAAGATGAAAAATTTGCAAATACACCAATCAAAAACACCATTAATTAGTAAAATTGATTAAAAGCACTAATGAACATGAAGTGTCACAGCATGTTAAGTGTTTCACATTATTTCTTAAGCATATTGCAATGTTGACTCTAAGGTAAGACCCTACCTAATTCACGAGATTTTAGAATACCTTGTTTGCATGTGGTTTATTACACAATTTTGCCATCCAATCATGAATAAAAGGAAATTGTGCTTTTTGTTACATAGCACTCTGTGCCTGTGGTTGCTTACAAATAGCTATTACTAAAGCTTTTAAAACTATTTTGCAGACATTACCTTGCTTGTGTACAGTGTGTTGCTTGTCTACTGCTACTGAAACGTAAAGCACAGACACAGAAATTAACATGAACACTGTAATACAGCACAGCATTACATTACACTTCATCACGTTCTCTAGAAGTAGGAATAACATGTGCTGTTGCAAAAATTAAAGAGCTACTGCCTTGTAATATTTGTATATCTTCTATTTTATATATGCTGAATTTCGCTGTGAATACACAAATATTTAAAGAAGCTGTCTTGTCCTTGCATGTGCCTTTTAGTCAGCCTAATTTTCCCAGAGCGTGATTCAAGCATCACTCCAGTAGCACTTGTTCAAAGGTAGACTAAATAGACGCTAAGCAAAACACTAATGCTTAGGGCTTGCCTCAGCTGTATGCGTTACTCTAAAGGTACTGATGCAGATGATCACAAGAAGATTATCAAAGCCATAAACCTGTTTTAGATTAACAGATTTAAAAACTATTTATAAACAGGACCAATACCAATTTGAAGGAAGTTCACTTTTTTTGTAGCCAAACTGTACTCCAAGACTTGGTTACACTCTGTTACTCTCCACCAGTAACGTTCTTTTTTAGTACCTCAGCAAACTACAAGAGTGTAAAAAGTCATTTGACAAATGCTTTGTATTTAAGTCTAGCTAACAAGAGCCCAAGGAGGGGAGGGAGCTAAAGAGCTCCTCCTGGTGAAGACTGAGATCTTCATTGACAAGATCTAACAAATTTATTGACCTAACTAGAGCTTAGTAACAAATATCTGCCATCATAAAGTAGTAGATGCTGCTGGTTTACTCTGTCAAGCACAACAGAGTAGAAACATACCCTTATCTTAGAGTCTTCTAATACACATCTCAGAAGAACTAAGGCTAAGAGTAGATCTTAAGCATTATTATCCAGCTAGTTGTTTGCTCACATCAAAATTAAGTTACCATAAAGGGTTGGAAAAACAAAACAAAAACTACACATGTACACAATGTGTACACATGTGAACACATGTACACATGTGTTCTACCTTGGAAACACAGGTTTGTACTCTAAAATAAATTAGGCCAGCCAACATTCTTATCTACTTCCTAATATGGAACACTGAACTTTGAACGTGAATAGCTGCTGCAGAAAGGACAACTCTGGCTTAGTCTTTTGCAAGGACAAGACAAGCCTTTAAATATTTACACATGATTGCTGTACCCAAAAGCGCAGAGTTGGATATATTTTAATACCAAATTAGTAATTCTGGCATAACATTCAGTGATCATGAATTTATTTTGTTGCTTATGTCTGTGGTCTCAAGCCTTTACAAAGGTTTGCTTAATTAGGAGCAAGTGAGAGGCCATGTTACAAAACTCCAATGTTTTGTAGCACACAAGCACCGAAGGCCAAGATGAGATATACTCATCTTCTGTCTCACTTGCTCACACCTCCAAAAAAATATTAACCTTGAGGACCAAAGTGTCCCTGGCTTGGGCTGTAGCTATGAAATCTATGGGGATGGGAGGGAAAAGGGAAAAGAAAAGGGGGTAATATGGGAAAAAAAAAAAATTGCAAGATTTTCTATAAGACATTGTCTCTGCTGAGTGTCAGCATATGAATTATGACAGTTCCAAAACACAGTGATGGCTTCCTCTCCCCACTGTGGAAAAGACTGGAGCTACTCACAGCCTAGAATGCCACGTCACAGCACCTGTGGTACTCTGACCAACACAGCCTGACTGTGGGATCAGAAAACACCCACTGATCTTTGAGAAAGGCAGGATCAGTGCTCCACTGATGATGTGGGGATAAGCAATTCCCTTTTCCCAATCCCTTCTAAGCACACTCAGTTGTAGTCTCATAGGGAAAAAAAAACAAAAAAACAGAAAAAATGAAAGAAAGAACAGGGCATTTGGATCAGATGAAACAATTTAGAATAGACTTCAAGGACAAGAACAGGAATCCCATCACAGTTCCAAGCAAGTGGAAGTCTCAACCTGTCCACATGTTAGCTTTAGATGCTACAGAGAAGACAACTATATTAGGTGCCCACAGCTCTTGGCTGTTTCGCTTTTAAAAACCTCAGGCCCACGGGTACTGTTACAAAACTCTATGCTTGTTTGTGAGGGCTGTAAATGACCTAACATCTGATTTTATTTTTTATTTTGTTACTGCAG
Seq C2 exon
GAGGGGAAATGAACCAGTATCTTTTGCCCCACCACGCAGATCTGGAGGCAGAAGAGTAATTGAGAATGCAACAGATGGAGGTGAAGAAGAAATTGATGGAAGAGATGGAGATTTCAATGGAAAAGCCAGTGAATAAACACGCTTAAAATTGCACTGCAGCAAGGGGAGGGAGGATGATATTTAGCACTGTTTAAGTCTACTCTTAGTGTCAAGGTCACACACACCCACTCCTCTGATGATGATGAAAGCACAACTGCCTTGTCTCCAATGTATAGGTTCATGATAAAAGTACTCCAGAACTTTCTTCATGAAATGTTTTTTGAAAAGTTTTGTTATAAATTCAGAGTAATTCACGAAGAATCTTCCAGAAAGTGAGTTCCAGTAGTTCAATTTAAATCTCAGTGAACTGAAGTTTACAAAGGATTTGTAGGACTGTTGCAGGAAAAAAAAAGGCATTGGTCAGTTAATCTTTTCTTAAACTTTCATTTTGTCTTAAGTATTCAATATAGTATTTTTTTTTCCTGCTTACTACACCCCTGATGCACCATTCACAAGGTGGAAGTGCCTTTTTAATCACATACTGAAAAATAAAATATCATTTGTTCAAATTAAATCAACTGTTACAGTTTTATATGCACCATGGATGTGCTTACACACTAATAAAAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]