HsaINT0107532 @ hg19
Intron Retention
Gene
ENSG00000133392 | MYH11
Description
myosin, heavy chain 11, smooth muscle [Source:HGNC Symbol;Acc:7569]
Coordinates
chr16:15802660-15808938:-
Coord C1 exon
chr16:15808766-15808938
Coord A exon
chr16:15802699-15808765
Coord C2 exon
chr16:15802660-15802698
Length
6067 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGATTCTCTCTCTGTTTCAGAGG
3' ss Score
9.78
Exon sequences
Seq C1 exon
GCAGAGAAAGGCAATGCCAGGGTCAAGCAGCTCAAGAGGCAGCTGGAGGAGGCAGAGGAGGAGTCCCAGCGCATCAACGCCAACCGCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACGGAGAGCAACGAGGCCATGGGCCGCGAGGTGAACGCACTCAAGAGCAAGCTCAG
Seq A exon
GTGAGGAGCCCGTGGCCCGGGAGGACCCCGTCTCTCAGGCCAGAGAAAAGCACTGGGGGCTCGGGCTCCTTTCGGCCTGCAAATGCCCCTTGTGCCCACAGCCGCCACTCCCTTCTGTGGTTTATTCCTGCTTCTCCTTAATCACTAAGCTTAGTGTGGGCCAGGCACTGAGATCAGACCCGGGCCCTGCCTTGCCTGGTAGCAGCTAACCTTCTAGATCCTTTAACGATCGACCGTCTCCCATCCGGTCCTCCGGCTGAGGAGGAGGAAGAGGCTATCCCCACTGTCTCCTCCAGCCCCTCCTTCATTGCATCACTGAGTCTTCACGACATCCATTGAAGCTGCAACACCACCCCCCGCCACTTCACCTCCTTCCTGACATGCTCTGCTCCTCCTTTCTCCCCCTCAGCACTGCTGCCATCTGGGCTGCATTATTCTCGGGTATGGGGGCTGTCCGACATTCCCCATCAGAAGGAAAAAGATCCCTGAAAAGTAGCAGGTGCTTACATTTCTGGCCTCTACCCACCGGCTGCAGTAGTCCCCCACCACCCTGCAATGTGACAACCAAAAATGTCTCTAGATGTTGCCAGAAGTCCTCTAGAGATGGGAGGGTACGACTGCCACCCCGCTGAGAATTCCTGCTGTCACTGGAGTGGGGGCTGTTTTCTCTCCCATGCCTCTGGTACCTTGGGGGTCCCCCCTGCTCCCAAGGGCTGCTTCCACCACCCTGTCCATCCATCCCGATTGGCTCCCAGGAGGTTTTAGCTCCGGGCTTCCTGTCTCCCACACCACTCCTCACAGTTCTCCATGATTTCAACATCCAGGTGGGCGACGCAGCCTCTCGGTTCCTTGACCCTCTGGGTGATCCTGCTGCTTCTACCGGGCCAACCAGTACTCCTAGGAGCCCTCACAATTTGACCCTCAGGCATCCCATTGTCTGCCTGGTGCCACCTTTCTTTGGCTCTGTCCCCAACGGGGTCTTCACTCCATTAATGCCATCAGCCTCTGACCCAGCTCCAAACCAGCTGTCTAGTAACCCCCGTCGCGCATCCTCAACATCCGGTTCCCCCTCTTGCATTGCTGCAATCATTTGGTGAAAGCACAACCCAAATGAAACTCAAGCTTGGCTGGGCACGGGACTCACACCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGAATCGCTTTGAGCTCAGGAGTTCAAGAGCAGCAAGACCCCATCTCTACAACAAACAAACAAAAATCAGCCAGGTGGGATGGCGCAAACCTAAAATCCCAGCTACTCAGGAGGCTGAGGTGGGACGATCAGTGGAGCCCCAGAGGTCAAGGCTGCAGTGAGCCATGATCTAGCCAATGCACTTACCCTGGATGGACAGAGTGAGACCCTGTCTCAAAAAACCCAAAACCCACTCTCCACCTTTTCCCACAGAGCAGGCCTTGCTCAGGGGTCCTCCCACACCCCTCCCTCATCTTCTCACTCTCTGCTGCTTTTCACTTTTTCTTTGAACTTATGATCGCTCCTCCCCATTCTCTCTCAGCTGGGGACCTTACTTCCTACTTAACTCAAAAGCAGAAATGATCATGAAACGTGCACAAGCTCCCACTGCCTCATCATCCTACCTCCGTGCACCTCTGTACACTTCTATTTTTTTTCCATTTCTATGCTGAACCCTCTGGCACCAACCGAGGCCAACACCTCCATTGGACCCGACCCTCTTGTTCACTCAAGCACATAGCTCCAAAAATCCTTATTTTGCAAGGTTTTCTCTTTCATTTGCTCCATCAGCAAATGGAATAACCTCTTAGCCCCATGTCTACCTTGCTACCCTTACTACAAAACTGGATGTGAATGCCGAAACCCTGTCTCTACCAAAAAATATAAAAATTAGCCAGGTGTGGTGGTGCATGCCTATAGTTCCAGCTACTCAGGAGGCTGAGGCACAAGAATGGCTTAAAACCGGGAGAGAGAGGTTGCAGTCCAGCCTGGGTGACAGAGTGAGACTCGGTCTCAAAAAAAAAAAAACTGTATGTGAAGAGTTGCTGGTTCCCCTCGCCCCCACCCATCACTCTCCCAGAAGCCTCCCATGGGTGACACTAATGGCCAGAGGTCCCCTGACAGGGCAGCAGCACGTGACGCAGTCCATCATGCCTCTGGCCTAATTCACTTGCTTCCCTGGACTTCCCCGACACCATCCACACCTGCTTGTCCCCCGACCTGTGGGGTTGTCCCTCTTCCTCTCCTCTGCTGATCCCTCACCTCGAAACCTGCTTGCCACTAGACCGCCCCAGGGTATCAACTTAGTTCTCTTTTGGGCAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTAGCACTATCTCAGCTCACTGCAACCTCTGCCTCCCAGTTCAAGCTATTTTTGGCCTATTTTTATATTTTTAGTAGAGATGGGGTTGCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGATCTTGTGATCCACCCGCCTCAGCCTCCCCACGTGCTGGGATTACAGGCATGGACCACTGCACGGCCTTAGTTGTTTTCATCTCTCCCCAGCGCTAGGTGAGAGGTCTCAACTAATCTTGGCGCTTTAGAATTCCATGTATATCTAATGACTCCTCAGTTCATCTCTGAGAAGCCCTAGCTTCTTCCTAGAACCTCAGACCACCCTCCCGTTCCCACATGGATGTCTAATAGGCAGCTCACACCAAACATGCTGCACCCCAAGTCCTGACTGAAACTCTTCACCCCCAAACTGGCTCCTCTCTCCAGCTCAGCAGCTAAAATGATGAAGTTGCCAACAATTCACATCACAAACCTCGTGGTCCTTCTTAACGTTTTGGTCTCCTTTATACCCCACATCCCATCTATGGGAGAATCTGGTCAACTTTCCCTAAAGAATCCTGCCCAGGCTGGGTGCAGTGGCTCACCCCTTAATCCCAGCACTTTGGGAGGCCAACGCAGGCTGATCACCTGAGGTCAGGAGTTCAAGGCCAGCCTGACCAACATGGTGAAACCCCGTCTCTACTAAAAACACAAAAATTAGCCGGGTATGGTGGGGCGTGCCTGTAATCCCAGCTACTAGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGACACAGGTTACAGTGAGCTGAGATCGCACCACTGCACTTCAGCCTGGGTGACAGACCAAAACTCGGTCTCAAAAAAAAAATCTCCAGTGTCTAGGACAGCACCAGGCAGAGTGAACCTTTATCCCTCGGGTCCTAGATATTTTCCCCGCTTCATTCTCATACCACCACAGCCATGTGCTGAGCCTCTTACTACCTTTAATACCAATGACTTGATCTTTTAACAGTTTTAATCATACATGAATATAACGGCAAATAAACATACCTCCTCTATATTTTTAAACCAGCATCACCTCTATCAACTGGTTACGATGAAAGTAATATGATAAAAATAGTATCAAGTTCAATATCTAGCTATTGTGGCCACAACTTGATCACCAAGACCTGAAGCCTACTTCTCCACTAAAAAGGGAGTGACAACAGCCATTAGCACCAAATAGACTCTCTCTGACATCATAATTAGACTTGTTTAAAAAGAGTTGGAAAGGAAATGACTTTCTCAGGGCCCAGTTCAGTTAGCGGATGGCATGCCCGGAAGCCATCTGAAATCACCTCTAGAGTTTGGGGACCACTGCGTGAGACAGGGAAAAGTCCAAACCCCTCTGAGAAGGGGAAGAGAGCAGCTGGCGCAGGGCACCAAGCCTTCAGGGAAAAGCCCCACTCGCTGCATGGTGAGCGCTTGTTGGTCCCCCATGGATAGGAGAGAAACCAGGCCTAGGCTCCCAAAGTACAGCAGGGGCCTGGAAGCATCTCCCAGGGTTGAGGGGTCAGTGGAGGAGAGCTGTTCTCACTGTGAAGACTCCTGGGGCAAAGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCTGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACTTCATCTCTACTAAAAACACAAAAATCAGCTAGGCGTGGTGGCAGATGCCTGTAATCCCAGCTACTCGTGAGGCTGAGACAGGACACTCCTTTGCAACCCAGGAGGAGGAGCCTGCAGTGAGCCAAGATCAAGCCTCTATACTCCAGCCTTCAGAGCAAGACTCTGTCTCCAAAAAAAAAACAAAAAACAAAAACCCTCAGATGTGCTCTGCTGGCAACCAGTCCCCCTGCCTCTCCTGAGTGGCTGGGCTGAGCGATGGGGATACAGCCACTCTGACTCCCTACCCCACTGCTGTCTCTGCTTCCCTTTCTCAGGCCCAGTGATTTCTTTTCTTTTTATTATTTATTTTTAGACGGAGTCTAGCTCTGTTGCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAACCTTTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGTGCGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGTGGCAAGGTTTCACCATACTGGCTGGGATGGTCTCGATCTCCTGACCTCGTGATCCACCTGCCTCGGTCTCCCAAAGTGCTGGGGTTACAGGCGTGAGCCACCATGCCCGGCCGGCCCAGTGATTCTTTAGCACACACTGGACACCTCCTGTGGGTTCTGCCCCAGACACTTGAGCCTTCTTGGGCAGCCAAGGGCAAAGTGGAACAAAAAGACCATTTTTGCCAGTTCCGACACGAATACACACATAATGCAGGTGGAAGGTCTGTCCTGCCTTCTGCATCTTTTGGGTGCACAAAAACATAAAATCAGGCACTAGAGCCCTGAGGGAGGTTGGTAAGCATGCCTGGCTCCTCAGCCAAGAAGGAACTGTAGTGCGAGTTTCACCAAGTTCTATCAGCCAGACGCATCTCGACACAAGCCCTCTCTAAAGCCAGACCCACTTACCTACCACTGGCTACACTGCCAGTTACCTCCGGCAAGAGCTGTACAAGGCCTCCACCTCTCCTCTCTTGCTAGAGGCCCGAAAGCTAATGAAGAGCAAGTAATCATAAACCAAGGGACAGGCGGCTGCAGGTTCCTTGCCTGGGACTTCTTGGCTTCTGTTCCAACACTGATTTCTCAAACTAGCTTGCTCAAATGCTTTTACTTCCCTGAACCAGTATGCAATCATGGGATTTATAGGAGGTTCTTAAAAGTAGCTCTAAAGGACAGACATTTTCCTTTCCATTTAAAAAACTGAGCCGGGTGCAGTGGCTCACACCTGTAATCCCAGCTCTTTGGGAGGCCGAGGTGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCATGGCCAACATGGTGAAACTCCGTCTCTACTAAAAATATGAAAATTAGCCAGCCACGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCAGAGATAGATCATGCCAGTGCACTCCATCCTGGGTGACAGAGTATCAAAAAACTGCTTATCCTTTCATCTACCAGCCTCACCAAATGCTCTTGGCGTCAGGTGATTCACTGCAACGTTGACTTAAGGGTGCTTTTAATGCCAGGTGCGGTGGTTCATGCCTGTAATCCCAAATCCCAGCACCTTGGGAGGCCAAGGCAGGAAGATCATTGACATCAGGAGTTGGAGACAAGCCTGACCAACATAGTGCAACCCCATCTGTACTAAAAATACAAAAATTAGCCAAGCACGTGGGGCCTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGACAAGGGGATCACTTGAATCCAGGACGTAGAGGTTGCAGTGAGCCAAGATCGCACCCCTGCACTCCAGCCTGGGTGACAGAGACTATCTCAAAATAAAAAAGAGTGCCTTTAATTATTAAATCGAAGCAAATGTCTTTAACAATTAAGAATATACTTAACCGGGCTCCTTCTTGTTTGCTGATGGTAACCTCCGGGGATTCTCTCTCTGTTTCAG
Seq C2 exon
AGGGCCCCCCCCACAGGAAACTTCGCAGTGATGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133392-MYH11:NM_001040113:41
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)