RnoINT0096376 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:852889-859184:+
Coord C1 exon
chr10:852889-853061
Coord A exon
chr10:853062-858563
Coord C2 exon
chr10:858564-859184
Length
5502 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTCTGTTTCAAACCCATAGGAG
3' ss Score
8.63
Exon sequences
Seq C1 exon
GCAGAGAAAGGAAACACCAAGGTCAAGCAGCTCAAGAGGCAGCTGGAAGAGGCCGAGGAGGAATCCCAGCGCATCAATGCCAACCGCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACTGAGAGCAATGAGGCCATGGGCCGTGAGGTGAATGCCCTCAAGAGCAAACTCAG
Seq A exon
GTAAGAATCCAAGGTAGCTGGAAGGGCCTTACCAGCCTAGAGTGCCTGCCCTGAACCCATGCATCAGCTTCCCTGCATCTCTGTACCCAACAACACCTTTAACTTCCTCCCATCTTTGTGATTCACTGAACATTTTTATAAGTCCAGCATTGGAGCAGGCATAGAGCTGAGCAGGGTATGGCCTCTGAGAAACTCATCTCCTATCCATTAACCCACATGTCCCATGCCCTTCTGTGTGGAGGAGGTGGAGGAAGATCACATTTCGTGAAGCCTGTTGTTCATTGCAGGATGGATAGCCACCAACCTTTGCTTCTTATCCTTCCCTGAACCTTCTGTTTCAGGTTCTCACACTGCTGTCAGGTAGAGTTGGGCTGTGCATGTAGGGTGTTTAGCAGGCCCATCTACACAGCATTGGGATAGGTGCAAATGTCTCCAGAAGTTACCAGGTGTCCCTCATGAAGATGACCTGCCCACATTACTGTGGGCACTAGGTTTGGTCCTCTTGCTCAGGGCTGCCTCTCTCTTTGTACCCTGTCATTCTGGATGCTGTTTCCTTCCAGTCTCTCTTCACTCCACTGTTCTCTGTGACTTTCATATCCCATGATACTTGCTTTCTGTCACTTGATCTTGCTATACTCTGGGATGTGATGAGAGACTCTAGACTCAAAGTGTACTGTGGGCATCCTGATGGTTGGAGCTACCTGTTTGCTCCCTTCACATTTCCTTCCCCAGCAGCCCCAGGTTCCTTTCAATGGTCAACAACCTTCACCTGCCCTTGTACACCTCCTCGCAACCCAAAGTCCTCCCTTGCTTTTCTGCCTTCATTTGGCTGGTACCCAGCCTGGCTCTAACTTAATACCTTCTGCACAGCCAAGACACAGATAAGCCAGATAATCCCCCCCTGCTGCTTCCATTCTGAGTGCTGATGAACCTGCCTCCATAAGTGATCTCTCGTCTCCAGTTCACTTCCCACTGAGGCCCTCACTTCTGTTTTAACTGGAAAGCAGAAATGATCATGAAATTCACGCCTGCTTTCCCCTAAACCTGTCCTGACATCTGTGCTGAGCTATGTAACAGAGCCAAGGCCTTGTAAACTTGGTCCTCATCTGCTTCACAGGCCCAGCATGTGCCTGGGTGCTGCCTCACTCTTCTTCACTTACTCCATTGAGTAAAAACGTCTAGCCCTGCTCCTCTGCTGCCCCTATCCACACACAATGCTCAGGTAGTATCAATCACCCTTCTTTAAGCCACACCATGGTCTACAATAGCCCAGGCTATTGGCCTTCACAGGGCCTACTCATCTGACTGCCCTTCTTTCTCTATCAAAAACCCACCATGCACTGAACTCCCCAGGCAAACCCACCAGGCACTGGACTGCCCAGGCAAACCCACCAGGCACTGGACTGCCCAGGCAAACCCACCAGGCACTGGACTGCCCAGACTCCATCTTGGTCCCTTTTTCATCTTTCTACTTCTAAAGTGATCCGTCTTGAAAAGAGCCTCCAATCCCTCAAGATGACAATGTGTGATGGTTCCTACTTGACAGGCAAGAAACCATCCTACTTAATTTCTCCAATCTAGTAGGAATATAAGAGCTATTCCAGCACTGAGAGCTCAGTACACAGGACCTGTTTCCACAATGACCTGAAGAATGTGTTCTGGTGGGTCTTGTGCTCTCTGCCCCGAGTGACTTGGGTTGGAGGATAGTCACCTCAGCTATCTGAGGTCTCTCTTCTCTCTTAGGCTTAATGGCTTTTTGGGATTATATTGATCATCTCTGTGGGTTCTACCCCACGTACTTGACCTAAGGTGGTATGGGACAAGATAGAACCAACTCCTTTTGAGGTACCAGTATGTACCCCACATTCTAGGGCCACAGAAACACGAACTCATACACTAGAGCTGTGTGAGGTTGGTAAACAGACAAGAAATCAATAAGCAAGTTTTTGTGCTGCTGGCCAGTAGATGGATTTCTACATGCCACAAGCCTTTGCCATGTTGCCCATCACTTCCCACTTGGCTGCCACCAGAGGTAAACGGAGTCAGATCACTTGGTTAAAGGGCTTGCTTTTGAGCATGAGAACCCAAATTCAATCCTGTAAACAAACTAGGCATGGTGGCCCAAGTTTTGCACCCCCAATGCTGGGGAGGCAAAAACAGGAGAATTCCTGGGACTTCCGATCAGCTAGCATAGTCCAACTAGTGAGCTCCTGGCCAGTGAGACCCTGTCTGAAAAATACAAAGTAGGCAATGTTCATGAAGACAACATCCACACACAGTCCACACATACCCGCACATTCATTCTGGTCTAATGCTGATACTTCAGACCTTTTTTTTTTTTTCAGATACCTTTACCTTTATACAGTGCTGGAACTTCTAAGTGTTTCTCAAGGGACTCAAGAGGACAGAAGTTTAAATGGTGCCTGTCCTTATTTAAAGTGCCAACTCCTCCAGGCTGGCTCTCTGGTTCATATTGACTGAGAAGGACCTTTCATTACTTGATTGAAGCTAGTGCCCTTATCATACTTAATCAGCTCCTTCCCAAGCATGGATGGTAACCTCTGGGGACTCTCTCTGTTTCAGAGGGCCCCCCCCACAAGAAACTTCGCAGTGAGCCACCAGGTACCTTGTGCCTCCAGCTTTACAGCTCGTGTGTCACACTGTCCCTTATATCTCTATGCCCAGCACCCCTTTCCTTGTCCCCATTCCTCTGTGCCAAGCACCCCTTCCTTGTCCCCATTCCTCTGTGCCCAGCACCCCTTCCTTGTCCCTATTTCTGTGCCCAGCACCCCTTCTTTGTCCCCATTCCTGTGCCCAGCACCCCTTCCTTGTGTCTTCCCTTTTCCAAGTCCTTGCAAATTTCTGTGAGACCTCCCAAATCTAAAGGCTTGGCTTAGATCAGAGCTGAGAATGTAAGCAGACCTCATCTCTTGAGTCATTGTCCTTCCTTCTGGCATTTTGTCAAACATGGCTTCTAGTAAAACACTTTGATCCACATCTCCATGAAATTTTAAAATACTGCATGTTGGTTTGTTGTTGTTGTTTTGGTTTGTTGTTTTGAGACAGTGTCTTGTGAAGCTCAGGTTGGCCCTAGCTACAGATCTTCCTGTTACTGCCTCCCAAGTGCTGCAATAACAGGTGTGTACTGCTCTCTCTTTTAAGTGATGCTTCAGATGGAACCCAGGGCTTCATGCATGGTAAACAAGCACCTTACCAATCGTGCTTTTGCTGAGACTGTTCTTACTTGCATGCTGAGCCACTCTTACACTGTCAGGATGCTCAGCGGTGTTTTACTGGTCGATACCTCACTGAGTACATATGCATTTTCCTCTTTGCACACAACCCTAAAGAATGGACATGGTTTCTAACTGACTGGCCTGGGTCACAATGACTACAGCCCAGAAACTAAACTCATGGTTAAGCTTGTCCTGTGGAAGGACATGGGCAATCCCTGTCACAGCAGAGATGCCAGGGCTTCAGAGGGCTTGTGCTTGCTTACTGTATTTTCAGTGCATGAGGGTGGGGATTGGACACTACCGGTAGGAACATGTCCAGGGACAGGAGAATGAACTCAAAGCACACGTGGCCCTTGTCAAGAAGGGTGTGTGTGTGTGGGGGGGATTCTGCTATTCTAGGATTTTAAGCACCTTTATTCCCCCATAGTGTATCCAGGCAATGATAGCTCAATGGATTCCCCAGGACCTCATGCAGAGTCCAAACACATCCTTGCTTATATCCATCCACCCGTTTGTTGTAGAATTTCAACTTTGCTCTTGCTGTCAAATATTTAAAACTAATCGAGGTCTTGCAGAGAGCATCCCCAAGGATATGAGGGGGTGCAGAGGAGTCCCCAGTCAGCAGGAAACAAAGTCTGATCTTCTCAGGAGGTCTGGACTTCTTATAGCGCCTAGAATAATCTCGAAGTGTTTGTAAAGATCCACAATTCTCCAGGATGAGATCCTGGAGGTTTTGGAACAAACCTCTATTGGGGGCCCCTATATCTGAGAGTTGGTATCAACTTTTTGTCTCACATTTAGAACTGCTTTCTCCAGTAGTGACCCCCTAAGCTGGAACAATGCCACTGTGGTCTCTTGATCAGTAGGGCATGACTTGTTTCTGAGATCAAGGGATAAACCCTTTGAGTGAACATATATAGACTGTTCCAAAAGGTAAACATTCCCAGAGCTTTGATGTAGATTTAGACATGGTGTCCAGCTCCAAGACAGTACCCATTGGGTTCAGATGCCAAGTACAGCCATGAGGAGAGAGGCACTAAGTGTCATCTCTATATAACACAGTCCAGGCCCCTTCACCCTCTCAAGGGAAGAAGTGCTTCCAAAATGGTCCTCTGAAGCTGGCCCTAGTGTCTTATTTTGGGAATAACTACAATTTTAAGTATTTATTCCTGATTGCTACATCTTGGGAAAACCCCAAAATGTTTACATAAGGAGTTCCCCTACCTGCTGATCATAAATCTTTGGGTCTGCTTATGCTTGTGCCTCTGGTTTATTACCTGTCTGATACATTCCTTTGGGCTAAAGAATGGGTCAGTGGGTGGGCATGCATATCCTCACGGCTTCTCCCTCCAGCCTCCAAATGGCCAGCAAGTTGTTTTTGTTACTCAATGTTAGTTTTCTCAACTGTACTAAAATGTGTTAGTATCTGTATTCAAATTCAGGTCAAACAGGGCTGGGCTGATCCAACAAGATCACATGTTAGTTCACTGAAAATCCATATACTCTTCTGTGAAATAGCAAAAGCTAGCTGCAAGTAAACTGACCTTTCCCCTTTCTGCCCACTTTCCTCTCCCCCAAGGCTGCATGCTACACAGCTAGCCCTTCCTGTAAAATCAGGTAGACTTAGATAGCCAGGACGGGACATGCAGAGGCTGAAGCATGAGTAGTGAAGATTAAGGGCTGCCCTGCCCACCAGAACAAAAATGCACCTCAGACTAACAATGTTTCAACTATTCATTTGAGTACCCACTTTGTGTTCTGCATTATGTGACTGTGGTGAGGAAAATACACTCAATCTAGACACCATCTCTCCACCATGGGGAAGATGCAGAGCAGGAAGTTCCACACCAGCAGAGGGCGCTATGTCACCCTTCTGCTAAGGCTTGTCCTTTGAGAAACTTTCCTTTCTACTTTGAAGACCTAAAATCATGCCTTTTTTATTTCCATGGACAGAGATTATAGATAAAACAGCAACAGCACCAGGTCTGTATACAACCTTCCACCTGATGAGACCAGGCCAGTGTGCTGCCCTGTATTGACTCCCGAGGCAGACCAGAATCTTATTTAAGTTATATTTTAAAACCCAGAGCCCCATGCCAGCCGAGTAGAGCCAGCAGACTTTCAGGACCGGCGGGCCTCGCCCTGGATTTGTTTGAGACTCGTTCATGTTGAGTGTGTGTTTAGTCTCGCCCTAGATAAAACACTTCTAATCTACTGGGAGATTTTCTTACTAAAAACTCAGGTATTTTCTGTTTCAAACCCATAG
Seq C2 exon
GAGAGGAAACGAGGCTTCATTTGTTCCTTCCAGAAGGGCTGGAGGCCGTAGAGTTATTGAAAACACAGATGGTTCTGAAGAAGAAATGGATGCTCGGGACTCAGACTTCAATGGAACCAAAGCCAGTGAATAAATTCAGTTGGACACTATGTCAGGGAAAACAAAATACCAAATGACAGCAAAGCCCAGCAGGCTGATTAGCATTTGTCTCCATTCGTTCTCAAGTCATAGACATTACCCCACCTCTCACCAGGAGTCAACCACAGCCCTGCACAAAGGATGTGAATTTAAGTTTTTAAATGTGCTACCAGAGAAAATCCAGATAGATGCAGGTCGGGAGCTGCAGTCGCCAGTGCCTTTGTTTACATGAAATGGAACGTTACGTGAATGGGTGCCCCAGCCCGCAACCCGCTCCCAACCATCAACTGCCTGACCTTCCAGTTTGGGAGGAAAACCTGTTTGAAAATTCCCCTCCCTTTCCTGCCTGCACACCTCAGACACACAGTTCACTAAGACCAAGTGACTTTTTCAGTCATCTGAATTAAGGAAGAGCAGAGCGAGCGCACCGCCTTATTTGCACCCACGGACACTTTCACGAATAAAAGGTTTTAAGTCACGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=NA C2=0.816
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]