DreINT0099984 @ danRer10
Intron Retention
Gene
ENSDARG00000063295 | myh9a
Description
myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
Coordinates
chr6:7578637-7582130:-
Coord C1 exon
chr6:7581958-7582130
Coord A exon
chr6:7579694-7581957
Coord C2 exon
chr6:7578637-7579693
Length
2264 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GTTGTGTTTGTGTGTTCCAGGCG
3' ss Score
9.66
Exon sequences
Seq C1 exon
ACTGAGAAGGCGAACATTCGTCTGAAGCAGATGAAGAGGCAGCTGGAGGAGACTGAGGAGGAAGCGGCTCGAGCAAACGCCTCCTGCAGGAAACTGCGGAGAGAGCTGGAGGACGCCACTGAATCTGCTAGTGCCATGAACCGGGAGGTCAGCACCCTCAAGAACAAACTCAG
Seq A exon
GTACTGGGACACGGATGATCATCCTTCAGGAAATATCACTTGAAAATCTGCAATTAATAGCAACAAATCAGTCTAAAATGTTTTGTATTTTCTTCCGGAAACGATTATAATATTTTTGTGTTGTATTCAGTCTATACATGCCGAATTAGTCACGTCCGGCAGATTTATTCCTATTTATTGAAGATGATGCAAGTCCAATGTGTAACCTCGATCAAGCCTTTCACCATAAAACATGTTTTATTTGAATGTGACATTTTAAAGACTCCTAGAAAAGATTTTTATACCGAGTGAGAGCATTTAAAAGTATAAACTCACAGGCCACTTTATTAGGCACACCTGTCCAACTGCTTGTACTGGTATTTCCACGCACAACCATCTCTAGGGTTTACAGAGAATAGTCCAAAAAAGAGAAAATATCCAGTGAGCGGCAGTTCTGTGTGTGCAAATGCCATGTTGATGTCTAAAGAGAAAGGACCAGAATGGTTCGAGCTAATAGAAAGGCAACAGTAACTCAAATAAGCACTTGTTACTAGGGATGTAACGGTATTGTAAATACCGTCATACCGCAATATTAAATTTTTTCGATATTACCGAAGTCGCATGACTCGGTAAAACTATAGGTCTTCAGAGAAAATTTGCTCAGGCGAATGAAGCGAACGGGAGGTAGCTGAAACTTCATTTCCCATCAGCCCCGGCGTGGCCATAATCCTTTGCGGTCTGTTGTCGCTACAGATCCAGTAATGCGGAAATGGAGTGTGCTGCCAGTAGCGGAGATGAAAAAAAGATGGAAATGATCGAACCTAAAGCAGTGTTCTGATCAGCTGTGTTGTGGCGCGCGTATTGTAAAGCGCCGAGGCGGGGTTGAGCGCGCATACTCAAGAGAGGTGTTGTCGCGCGCCTACTGAAGGGCTGGACTGGACGGAGGTTGTGTCGCGTCGCGGGGGCACTTTTGATCGTTTTGGAAGGGCATTTTCTATCCAAGACTAAAAAGGGCATGTGCACTGCACAGGTTGAGCCCTATGTGTGCACGTGCCTGCAAGTTGGGGAATACGACTAATAACAGTCATGGGGACTGCAGAAACACAGCACACTGTTCAGATTGATGCAGACATTGACTTGTACCGCAAAGAGATCTCTATCTCACTCATGGTTTGTCTTCTCAAGTGGGGGAAAGACAATGCACAACGTTACCCCACTGCTGTCAACATGGGCCAAGTCATATCTCTCTTGTCCCAGAAACCTCAGTCCCAAATGAGAGGGTTTTTTTTCTGTTGCAGGGGACATTGTAAATACCCAGACATACCAGCTTTTACCAGATTATAATTATATGATAATTTTTCTTTAAACCCATCTCTATCTAAGTGAGTGAGTGATTAAATGTTAAATGTGATGAGTTTTCAACAATACTAAATTGAAACTTTATTTTTTTACATGGTTTAATAATTTTTTTGTTATTAAAATTGAAGTTCCTGTTTCAAAGCTAACAGGTAGATGGCTAATTTGTATGTCATTGACACTTTTGGCACTTTTTTGGAAAATTTTCAAAAGTTTTTTTTTTTCCTGTAAATGATTCAATAAATACCGTACCGTGACATTCATACCGAGGTATTACCGTACCGTGAAATTCTGATACCGTTACATCCCTACTTGTTACAATTAAGGCATGCAGAAGAGCATCTCTAAACGCACGACATGGGCTACAGCAGCAGAAGACCACACCGGGTACCTCTCCTGTCAGCTAAGAACAGGAAACTGAGGCTACAATTCAAACAGGCTCACCAAAATTGGACGATAGAAGATTGGAGAAACCTTGCCTGGTCTGAGTCTCGATTACTGCTGCGTCATTCGGATGGTAGGGTCAGAATTTGGTGTCGACAACATGAAAGCATGGATCCATAGATTCGAATCATGGATGTGCAGCCGACAAATCTGCAGTAACTGCATGATGCTATCATGTCAGTATGGACCAACATCTCTGAGGATTATTTCCAGTATCTTGTTAAATCTATGCTATGAAGTATTAAGGCATTTCTGAAGGCAAAAGGAGGTCCAACCCAGTACTAGTCAATGTGTACCTAATAAAGTGGCCGGGTGAGTAAGCAGTCATATCACCTTAAATATTCTAGTTGTTGGCAGTAGGGGGTGCCCACGACCAGGTTTTATTGAAATCATCTATTGAAAATGATGCACTTCAACAAGCACAGTCTTCATAAATGTCCACACAGCTAGTGTTTATATAGGTCTGTTGTGTTTGTGTGTTCCAG
Seq C2 exon
GCGTGGAGATTTCACTGGTAATGTGCGTCGTGCTATTGGGCGCACTGGTGTGGAAAGTGATGATGAGAATGACCTGAAGAGTGAGGGGTCCGAGCCAACTCCTGAGTAAAATTCAGTGCTGAGCCCCTGGGTATACCAGATGAGGACCTGCTATCAGCCATCATGCTCCTCTGTTTTTACACAACTGTGTACTTAATGGGGTTTTCCCTGCAATGTTTTAAAGTCTATTACGAGTTAAACTATTAATTGGACCACTTGGTGTTCAACATTAATAAATAAAAAAAAAAGGTATAAGGTTGGGAATGTGTTCATCTTGCCAATTACCAAGAATTATCTTTGCAATGATGCTGAAATGTTTCATTCGGCCTGTTCTGTCCTTACCCTGTTGACAACCGCCTTACAATGCATTCAATAAATATCGGCTATTTATATTTCACATGAGAGACAAAGTGTTTATACATTTTCAAAATAAATAATTTTTTTATAATGGAAAGACATTACCTTTTTGAAATACTACATAATCTAGGATTTGCAGAAATATCAACAATCAGCCAAAGAGATTTATCTTGCAGCCGTTTTGTTTCAAGAGCACTTCAGCACCAATAAGCCTTTTCCTGGTAGTTTCACTGCACTTTTCCACCCGTTTTAAAAGTTATTTTGGACAGTTTGCCTTAATTTTATTAAAGGTATTGTTAATGAATTGAGTTCTCACTCAGGACTTGTGTACTTACTGCAAACCGTTTCTAATCCATTCATGATGTTTGGAGTTTCACACTTAAGGTGGTGGGTTGTAGTTTTTACATTTATACTCAAACTGTTATTGTTGGTTCTTTTCCATGAATTTACATACGTGCTGCTTTTATCCCAATAGTATTTGCTGCATGATACACAATTATTTTTCTTTAAATCACCTTAGTTCGATAGAAGAAATCATGATATGCCTATAAATTGTCAAACTCTGTGCATTGGTAGTGGAATTACTGTATTTGCAACAATTGAAAATGTATTTCTCACTTCACATGTTCCATTGCATCTGAATAAAGCTTTGTCTTTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063295:ENSDART00000149823:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]