GgaINT0105114 @ galGal3
Intron Retention
Gene
ENSGALG00000012533 | MYH9
Description
NA
Coordinates
chr1:53823304-53824065:+
Coord C1 exon
chr1:53823304-53823476
Coord A exon
chr1:53823477-53823641
Coord C2 exon
chr1:53823642-53824065
Length
165 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCCTGTCTGTCCTTCCCTAGGCG
3' ss Score
12.25
Exon sequences
Seq C1 exon
GCGGACAAGGCGAACATGCGCTTGAAGCAGCTGAAACGCCAGCTTGAGGAAGCAGAAGAGGAGGCCCAGCGAGCCAACGCGTCCCGCAGGAAGCTCCAACGCGAACTGGACGATGCCACTGAAACAGCTGATGCAATGAATAGAGAGGTCAGCTCCCTCAAGAGCAAACTCAG
Seq A exon
GTAAGGCAGAGCATTTTGTGCCGTACCTTGGCAGCTGGCGCAGGGTAGGCTTGCAGCAGCTGCCCGTGGCCAAACAATCTGTTTCCTCTCCTTTTTCCCAAGCCTGCCATGTCTGGTGAGGGCAGTGAATCTTGTGTTACTGATGTCCTGTCTGTCCTTCCCTAG
Seq C2 exon
GCGTGGGGACCTGCCCTTTGTTGTCACACGTCGGCTTGTCAGGAAGGGTACAGGAGAGTGCTCCGATGAGGAAGTGGACGGCAAGGCAGAAGCTGGTGATGCCAAAGCTACTGAATAAGTCCTCTCATTTTGCCCAGGTTACACATGATGGAATGACCCATCCACCCTCCCCTTTTCCACTGGACTTTCTGCAAACCCTCTCCTCTTTAAATTGGCTGAGGATCTGCAGAGCGAGTCCAGCTCTGTGTATCTGGAGCCATCGGGCATCTGTGTTCCTCGTTTCCTCCTCTTTCCAGTTTCCTAATCCTCTTTGTATTTAATGCCAAAGAGTTGGGGCTCTAAAATCTGAACGGCAGTTTGGCATCTACAAAGTCGTGTAGAACTGTCTGTGCCACGTCTGCTGATGAATCCTTACACAATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012533:ENSGALT00000020472:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.948 A=NA C2=0.564
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.7=100),PF131661=AAA_13=FE(26.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.5),PF131661=AAA_13=PD(6.9=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACGATGCCACTGAAAC
R:
AGTCCAGTGGAAAAGGGGAGG
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]