MmuINT0103718 @ mm10
Intron Retention
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77760587-77763124:-
Coord C1 exon
chr15:77762952-77763124
Coord A exon
chr15:77762017-77762951
Coord C2 exon
chr15:77760587-77762016
Length
935 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCCTCTGCCTCTGCCCACAGGCG
3' ss Score
13.17
Exon sequences
Seq C1 exon
GCTGACAAGGCGTCCACCCGCCTGAAGCAGCTTAAACGGCAGCTAGAGGAGGCTGAAGAGGAGGCCCAGCGGGCCAATGCCTCACGCCGGAAGCTGCAGCGTGAGCTGGAAGATGCCACAGAGACCGCTGATGCTATGAACCGCGAGGTCAGCTCCCTGAAGAACAAACTGAG
Seq A exon
GTGAGCCAGCCTATCCTACTCAGTACGTGGGTTTGAATGGAAACCCATAGGCCGCTTCTAGAACTGGGGGCTATGTAGGCTTTTTCTAGTAAGAGATTGATTTTTAGTTCAGCAAAACTGAGACTTGGAGCTAATGGGACCATTCTGGGCACATTTCAGAAAGCCGTTTCCTTCCAGAGCCGGTGTGCATGGTGGTGGGGTACAATGACAGACGCAGAGGTGGCCTCCCTAGGGTGCCCTTTGGGGTCCATGCCTCTGGGACTTAGCTAGGCTCTCAGATGTACTGCCGATTCTTGGCAGTTTGTTCCCAGCCCATCCTGCAGCTCCAAGCCTGATGAACGGTGCTTCCATGCTGGGGTTTTTGAGTCTGCAGTCCTAGGAGATGTCCAAGAGGGAGTGCTGGCATGGGTCACGTGCAGCACGCAGGAAAGCTTGGTTCTGTTAGTGTTAGTGGCCATTCTCCCTCCAGTCAGAGGGGATCTTTTCTGAAGCATGAAAATCAGACTTTCCTGAGAATTTCATCTGTGCTTTCTAACATCCAGAGGATGCCCCCAACTCCTGTGTGAACAGCTGTTCCTCAGCTTCTGGGTCCACTTATTTCGTTTTGTGGTGCTGGGATAGAACTCGGGGTCCCACGTGTGTTAGGCATGTGTTCTGCCACTAAGCCACTCCCCACTCACCCTGCCTACTTGTGAGGCCTGAGCACAGGCAGGCCGTGCAGAAGGCAGCTCCACCTGCCTCCAGCAGCCCCCTCTGCTGGTGCTCTGTAGTAAAGGCACCCGGCAGTTAAGGCTGGCAATTGCTCTGGTGGTCCACTTCCTCGGGCAGGGTTGCTCCTTGGCCTCCTTCCCTCTAAAGACCACTTTGAAGTCTTCATACTGGGCTGCCCATTTCTCTTTAGCTGGGCCCCACTGACCCTCTGCCTCTGCCCACAG
Seq C2 exon
GCGTGGGGACCTGCCATTTGTCGTGACTCGCCGAATTGTTCGGAAAGGCACTGGCGACTGCTCAGACGAGGAGGTCGACGGTAAAGCAGATGGGGCCGATGCCAAGGCAGCTGAATAGGAGCTTCTCCTGCAGCCCAGGCGGATGGACAAACGGCTCTGCCTCCCTCCCCCAACCCTCCACACCCCTGCCTTGAGACTGCTCTGACCATGTCCCCCTCCTCCCAAGGCCTTCCCGAGGGCATTGGCTTCCTCTGCTGCAGCCCTTCCAGTCCTCCATACCCTTTGAGAATCTGATACCAAAGAGTCCAGGCTGGCTCAGGCCGGATGACCCACAGGGTCTTGTCCTCCTTGCCTGAAAGCACGGGTGGTGGGCAAGAAGGGCGGCCATTGGAGTAGGCACAAGAGTTTTCTATGAATCTATTTTGTCTTCAGATAAAGATTTTGATAGCTCAGGCCTCTAGTAGTGTTACCCTCCCCGACCTCGGCTGTCCCCGTCCCCCGTCCCCCCTGCTGTTGGCAATCACACACGGTAACCTCATACCTGCCCTATGGCCCCCTTCCCTGGGCCCTATTGGTCCAGAAGGAGCCTCTGTGCTGGGTGCAGAACATGGGGCACTCTGGGAATCCCCCCACTCCCTTCTGGGCAGCACTGGTGCCTCTGCTCCTCCGACTGTAAACCGTCTCAAGTGCAATGCCCCTCCCCTCCCTTGCCAAGGACAGACCGTCCTGGCACCGGGGCAAACCAGACAGGGCATCAGGGCCACTCTAGAAAGGCCAACAGCCTTCCGGTGGCTTCTCCCAGCACTCTAGGGGACCAAATATATTTAATGGTTAAGGGACTTGCAGGGCCTGGCAGCCAGAATATCCAAGGGCTGGAGCCCACTGTGCGCTCTGGTGCCTCTCCTAGGACTGGGGCCAAGGGTGGTCGAGCTGTGCCACCCACTCTATAGCTTCAAGTCTGCCTTCCACAAGGATGCTTTTGAAAGAAAAAAAAAGGTTTTATTTTTCCCTTCTTGTAGTAAGTGCTCTAGTTCTGGGTGTCTTCACTGCCTTGCCCTGGAACTGTGTTTAGAAGAGAGTAGCTTGCCCTACAATGTCTACACTGGTCGCTGAGTTCCCTGCGCACTGCACCTCACTGTTTGTAAATGCTGTGATTAGGTTCCCTTATGGCAGGAAGGCTTTTTTTTTCTTTTTTTTTTTCTTTTCTTTTTTTTTTTTTTAAAGGAAAACCAGTCAAATCATGAAGCCACATACGCTAGAGAAGCTGAATCCAGGTCCCAAAGGCGCTGTCATAAAGGAGCAAGTGGGACCCGCACCCCTTTTTTTATATAATACAAGTGCCTTAGCATGTGTCGCAGCTGTCACCACTACAGTAAGCTGGTTTACAGATGTTTCCACTGAGCGTCACAATAAAGAGTACCATGTCCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443:ENSMUST00000016771:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.948 A=NA C2=0.564
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100),PF131661=AAA_13=FE(25.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.5),PF131661=AAA_13=PD(9.0=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAAGATGCCACAGAGAC
R:
GTATGGAGGACTGGAAGGGCT
Band lengths:
348-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types