BtaINT0097424 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75094866-75096453:-
Coord C1 exon
chr5:75096281-75096453
Coord A exon
chr5:75095122-75096280
Coord C2 exon
chr5:75094866-75095121
Length
1159 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCGCTGCCTCTGCCCCCAGGCG
3' ss Score
11.95
Exon sequences
Seq C1 exon
GCGGACAAGGCGTCCACCCGCCTGAAGCAGCTCAAGCGGCAGCTGGAGGAGGCGGAGGAGGAGGCCCAGCGGGCCAATGCCTCCCGCCGGAAACTGCAGCGCGAGCTGGAGGATGCCACTGAGACGGCGGATGCCATGAACCGCGAGGTCAGCTCCCTCAAGAACAAGCTCAG
Seq A exon
GTGAGCCCCGCCAACTGCCCCCCGCCCGACTCCCTCTCCCTCACCCATACCCACCCCGCCGTGTGACCCTTTCTCCTCCAAAAAGTTGCTTTGTCCTGAAAAGCAGAATTCTGACCATGAGGCTATTGTAAAACTCAGTCCCCTTTCTCAGCCCTGTCAGTGGGCAGGGCACTTACTGACACCAGAAAAGTGCTTTTCAGAGAGCCCTTCCTGGTTCTCCGGCCTCCTAGGCTGTAGCCCAGCCTTTTGAATAATCTCTCTGGGTGATTGATTCCCATCCTGCCTGAAAAGTCTGTTCCTGTCATGGCCCTTAAACCCGCTGAGAACGTTTTCAGGTTTTGTGAACTAGAAGTTGCTCAAAGCCACCCAGCCAGGCCCTGGCACAACTCCGGTCAATCTTCCAACCCTGATCAGGTGGAGAGGGCTGCTTGGCATTTCTCGAAGGAGTGTCCCGATCAGGCAGCATGAAATGGTTGAGGCAGAGGGCCTTTTTGGTCGAGATTGTCATTGTTGACTTCCTTTTCCCAGTGATCCTTTTTGTTTTTTAAGCATAAAAGCAACAGTCTAGTCAGTGTTTATGTTGTTGGTTTTCTTTTCTGGGAATGGAAGAGGTGCCTGTTTGTGTACACTGCACTGACGGCCTGTCTCTTGATCTCACCTGTTTGGTACCAAGTGTGACCAGAGTGTGGTGTTTTGCAGAGGTGGCTCCTTCTGCTCTTGGGGCTCCTTCTGTTGTTTAGTCGCTCAGTCGTGCCCGACTCTTTGCGACCCCATGGACTGTAGTCAAGCAGGCTCCTTTGTGGGATTCTCCAGACAACAATACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAATCTAGGGATCGAACCCGTGTCTCTCATATTTCCTGCATTAGCAGGCGTTTCTTTACCACTGGGCCTCCTTTTAATCAGCCCCTATTACCTGACAGTTTTTTGCTGGTGTTTGGAGTGAAAGCAGGAAGCTTCAGTCACCCCCCTTATCGTGAGCCCTCCTGTCCCACCCTGAGGCCCCCCATTGCTTCTCCCCGTGGGGTGTCAGGAGCTAGTCTTCCTCTGAGGTTGCTTTGAAACACACGAGCTGTTCTGTGGCCACCTGGCCGGCCCTGCTAACCGCTGCCTCTGCCCCCAG
Seq C2 exon
GCGTGGGGACCTGCCATTTGTTGTGCCCCGCCGAATGGCCCGGAAAGGTGCCAGCGACTGCTCGGACGATGAGATGGATGGCAAAGCCGACGGGGCTGAGGCCAAAGCCGCCGAGGCCAGAGCTGCTGAGTAACCGGCTCTTCTTCTCCTGCTGCCCGGAGACGGACATCAGTGACTCCGCCTCCCCTCCCCAGCCCCCACAGCACCCCCTCCTCCCTCTGGGGACTGCTGTGACTGTGACCCCACCTCGTCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCTGAAGCAGCTCAAG
R:
GGGAGGCGGAGTCACTGAT
Band lengths:
342-1501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]