HsaINT0107991 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36677323-36680311:-
Coord C1 exon
chr22:36680139-36680311
Coord A exon
chr22:36678832-36680138
Coord C2 exon
chr22:36677323-36678831
Length
1307 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCTTCTACCTCTGCCCCCAGGCG
3' ss Score
10.04
Exon sequences
Seq C1 exon
GCCGACAAGGCATCTACCCGCCTGAAGCAGCTCAAGCGGCAGCTGGAGGAGGCCGAAGAGGAGGCCCAGCGGGCCAACGCCTCCCGCCGGAAACTGCAGCGCGAGCTGGAGGACGCCACTGAGACGGCCGATGCCATGAACCGCGAAGTCAGCTCCCTAAAGAACAAGCTCAG
Seq A exon
GTGAGCCGCCCTGCCCACCCGCCCCTTTGCCTCGGCACTTCTCTCAAAAGGTAGCTTGTTCCTCAACCAGAGCCCACAAGCAAGGCACGAATGTCACCAAGAAAGGACTGCACAAAGCAATCCCTGCCCCTTCTGGCTCCTTGCCTTTGAGGCTTTAGCTTAGTGTTTTGAACACACAGTAAACTCTAGGTAGTTTATTCCCAGCTGTCCTAAAAGTCTATTGTCTTTTGAATTGGAAGTTGCTTGAGGCCACCTGGCCCAGTCCTGGCACATGTTAGGTGCCTCAGTTAAATATCTGCAAAACGAATGTGAGCCTCATGAGCAATGCCTACAGAGGTTAAAAACGCTCCTTTGCGTTTCTCAGGGAGTGTTAACACTCAAGAAGTAGTGAATGTTTGAAGCAGAGGATCTTATTCTCTGAGATTCTCATTTCTTACGTGTTTTTTTGTGGGTTTTTTGAGACTCTCATTTTGTGTTTTTTGAGATACTCATTTCTTACATGTTTTTTTCTTATGTGTTTACGTGTTTTTTTTATTTTTTTTGTTTTTTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAGACTGGAGTGCAATGGTGTAATCTCGGCTTGCTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTCCCTCAGCCCCTGGAGTAGCTGGGATTACAGGCATGCACCACTATGCCCGGCTAATTTTTGTATTTTTAGTGGAGACGGGGTTTTACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGCTCCACCCGCCTCGGCCTCCCAGAGAGCTGAGATTACAAGGATGAGCCACCGTGCCAGGCCTTCATGGGGCTCTTTTTGTAAGCATAAGTAGTCAGTATTGTATATGAATTTTCTGCCATGTGGTAGAAAGAGGGTGCCTGTCTTTGTACTCTGTGTGAACAGGCACACCTGTTTACCTGTCTTGGTTTCACCGGTTTTATAGGAGTTGCAACAGAGGATGGCATTTTACACTTACTTTTGTGCCTTTCCTGTTGTAATTGGTCCTGTTTGCCTGAGCTGTTTTTGTGCTACTGTTGTGTGTGAAGATGTCCGACACCTAAACATTTTGCGGGAAGCTTTGCCTGCTTTCCTGAGAGTGGTCCTGTCTAGCTCAGCTGTGGCTCCCAAGACTCCACTTTGCTTCTTTCTGGTGGGAGCAGCCAGGCACCTGGTTTCCCTCTCGAATTCACTTTGAGATGTGTGGGCTGTGCTGTGGCCGCCCCTGGCCTGGCCGGGCCCGCTGACCCTCTGCTTCTACCTCTGCCCCCAG
Seq C2 exon
GCGCGGGGACCTGCCGTTTGTCGTGCCCCGCCGAATGGCCCGGAAAGGCGCCGGGGATGGCTCCGACGAAGAGGTAGATGGCAAAGCGGATGGGGCTGAGGCCAAACCTGCCGAATAAGCCTCTTCTCCTGCAGCCTGAGATGGATGGACAGACAGACACCACAGCCTCCCCTTCCCAGACCCCGCAGCACGCCTCTCCCCACCTTCTTGGGACTGCTGTGAACATGCCTCCTCCTGCCCTCCGCCCCGTCCCCCCATCCCGTTTCCCTCCAGGTGTTGTTGAGGGCATTTGGCTTCCTCTGCTGCATCCCCTTCCAGCTCCCTCCCCTGCTCAGAATCTGATACCAAAGAGACAGGGCCCGGGCCCAGGCAGAGAGCGACCAGCAGGCTCCTCAGCCCTCTCTTGCCAAAAAGCACAAGATGTTGAGGCGAGCAGGGCAGGCCCCCGGGGAGGGGCCAGAGTTTTCTATGAATCTATTTTTCTTCAGACTGAGGCCTTTTGGTAGTCGGAGCCCCCGCAGTCGTCAGCCTCCCTGACGTCTGCCACCAGCGCCCCCACTCCTCCTCCTTTCTTTGCTGTTTGCAATCACACGTGGTGACCTCACACACCTCTGCCCCTTGGGCCTCCCACTCCCATGGCTCTGGGCGGTCCAGAAGGAGCAGGCCCTGGGCCTCCACCTCTGTGCAGGGCACAGAAGGCTGGGGTGGGGGGAGGAGTGGATTCCTCCCCACCCTGTCCCAGGCAGCGCCACTGTCCGCTGTCTCCCTCCTGATTCTAAAATGTCTCAAGTGCAATGCCCCCTCCCCTCCTTTACCGAGGACAGCCTGCCTCTGCCACAGCAAGGCTGTCGGGGTCAAGCTGGAAAGGCCAGCAGCCTTCCAGTGGCTTCTCCCAACACTCTTGGGGACCAAATATATTTAATGGTTAAGGGACTTGTCCCAAGTCTGACAGCCAGAGCGTTAGAGGGGCCAGCGGCCCTCCCAGGCGATCTTGTGTCTACTCTAGGACTGGGCCCGAGGGTGGTTTACCTGCACCGTTGACTCAGTATAGTTTAAAAATCTGCCACCTGCACAGGTATTTTTGAAAGCAAAATAAGGTTTTCTTTTTTCCCCTTTCTTGTAATAAATGATAAAATTCCGAGTCTTTCTCACTGCCTTTGTTTAGAAGAGAGTAGCTCGTCCTCACTGGTCTACACTGGTTGCCGAATTTACTTGTATTCCTAACTGTTTTGTATATGCTGCATTGAGACTTACGGCAAGAAGGCATTTTTTTTTTTTAAAGGAAACAAACTCTCAAATCATGAAGTGATATAAAAGCTGCATATGCCTACAAAGCTCTGAATTCAGGTCCCAGTTGCTGTCACAAAGGAGTGAGTGAAACTCCCACCCTACCCCCTTTTTTATATAATAAAAGTGCCTTAGCATGTGTTGCAGCTGTCACCACTACAGTAAGCTGGTTTACAGATGTTTTCCACTGAGCATCACAATAAAGAGAACCATGTGCTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100),PF131661=AAA_13=FE(27.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.5),PF131661=AAA_13=PD(1.9=10.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAACCGCGAAGTCAGCTC
R:
GATGCAGCAGAGGAAGCCAAA
Band lengths:
348-1655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)