GgaEX0009273 @ galGal3
Exon Skipping
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7612872-7628045:-
Coord C1 exon
chr14:7627873-7628045
Coord A exon
chr14:7626733-7626764
Coord C2 exon
chr14:7612872-7623923
Length
32 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTATCTCTGTTTCAGAGG
3' ss Score
9.87
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GCCGAGAAGGGCAACCTACGGCTCAAGCAACTGAAAAGGCAGCTGGAGGAGGCTGAGGAAGAGTCTCAGCGTATCAACGCAAACCGCAGGAAGCTGCAGAGAGAGCTAGATGAAGCTACTGAGAGCAACGATGCCCTGGGACGGGAGGTTGCAGCACTGAAGAGCAAGCTAAG
Seq A exon
AGGGACACAGGAACCTTCGCATGACTAAGCAG
Seq C2 exon
GAGGGGAAATGAACCAGTATCTTTTGCCCCACCACGCAGATCTGGAGGCAGAAGAGTAATTGAGAATGCAACAGATGGAGGTGAAGAAGAAATTGATGGAAGAGATGGAGATTTCAATGGAAAAGCCAGTGAATAAACACGCTTAAAATTGCACTGCAGCAAGGGGAGGGAGGATGATATTTAGCACTGTTTAAGTCTACTCTTAGTGTCAAGGTCACACACACCCACTCCTCTGATGATGATGAAAGCACAACTGCCTTGTCTCCAATGTATAGGTTCATGATAAAAGTACTCCAGAACTTTCTTCATGAAATGTTTTTTGAAAAGTTTTGTTATAAATTCAGAGTAATTCACGAAGAATCTTCCAGAAAGTGAGTTCCAGTAGTTCAATTTAAATCTCAGTGAACTGAAGTTTACAAAGGATTTGTAGGACTGTTGCAGGAAAAAAAAAGGCATTGGTCAGTTAATCTTTTCTTAAACTTTCATTTTGTCTTAAGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
PF0157614=Myosin_tail_1=PD(0.1=10.0)
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCTGCAGAGAGAGCTA
R:
CGTGGTGGGGCAAAAGATACT
Band lengths:
122-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]