RnoEX0057006 @ rn6
Exon Skipping
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:852889-859184:+
Coord C1 exon
chr10:852889-853061
Coord A exon
chr10:855645-855683
Coord C2 exon
chr10:858564-859184
Length
39 bp
Sequences
Splice sites
3' ss Seq
GGGGACTCTCTCTGTTTCAGAGG
3' ss Score
7.99
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GCAGAGAAAGGAAACACCAAGGTCAAGCAGCTCAAGAGGCAGCTGGAAGAGGCCGAGGAGGAATCCCAGCGCATCAATGCCAACCGCAGGAAGCTGCAGCGGGAGCTGGATGAGGCCACTGAGAGCAATGAGGCCATGGGCCGTGAGGTGAATGCCCTCAAGAGCAAACTCAG
Seq A exon
AGGGCCCCCCCCACAAGAAACTTCGCAGTGAGCCACCAG
Seq C2 exon
GAGAGGAAACGAGGCTTCATTTGTTCCTTCCAGAAGGGCTGGAGGCCGTAGAGTTATTGAAAACACAGATGGTTCTGAAGAAGAAATGGATGCTCGGGACTCAGACTTCAATGGAACCAAAGCCAGTGAATAAATTCAGTTGGACACTATGTCAGGGAAAACAAAATACCAAATGACAGCAAAGCCCAGCAGGCTGATTAGCATTTGTCTCCATTCGTTCTCAAGTCATAGACATTACCCCACCTCTCACCAGGAGTCAACCACAGCCCTGCACAAAGGATGTGAATTTAAGTTTTTAAATGTGCTACCAGAGAAAATCCAGATAGATGCAGGTCGGGAGCTGCAGTCGCCAGTGCCTTTGTTTACATGAAATGGAACGTTACGTGAATGGGTGCCCCAGCCCGCAACCCGCTCCCAACCATCAACTGCCTGACCTTCCAGTTTGGGAGGAAAACCTGTTTGAAAATTCCCCTCCCTTTCCTGCCTGCACACCTCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=1.000 C2=0.816
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100)
A:
PF0157614=Myosin_tail_1=PD(0.1=9.1)
C2:
PF0157614=Myosin_tail_1=PD(0.1=2.2)
Main Inclusion Isoform:
ENSRNOT00000084608fB9196
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTCAAGAGCAAACTCAG
R:
TCTGAGTCCCGAGCATCCATT
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]