BtaEX0024193 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22412868-22553865:-
Coord C1 exon
chr13:22553719-22553865
Coord A exon
chr13:22498693-22498756
Coord C2 exon
chr13:22412868-22413039
Length
64 bp
Sequences
Splice sites
3' ss Seq
AACAGATTATTTTCTTCCAGCAC
3' ss Score
5.5
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TTTTTCTTTCTTTTTTTCTTTCACTCCTAATTTTGTTAGGTCAAGTACAAAAGAGATTTTGAAGAAAGCAAAGGGAGGGGCTTCAGCATCGTTACAGACACTCCTGAACTACAGAGGCTGAAGAGGACTCAGGAACAAATCAGTAAC
Seq A exon
CACAGTGGAGGATTTGTTGTATGATGGAAAATGAGAAAAGAGCAGCCACTGAAGTCTGACCAAG
Seq C2 exon
GTGAAATATCATGAAGATTTTGAAAAGACAAAGGGAAGGGGCTTTACTCCTGTTGTGGATGACCCTGTGACAGAGCGAGTGAGAAGGAACACCCAGGTCGTCAGCGATGCTGCCTATAAAGGTGTCCATCCTCACATCGTGGAGATGGACAGGAGACCTGGAATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339_MULTIEX2-1/23=C1-C2
Average complexity
C1
Mappability confidence:
96%=100=96%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.431
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGGCTTCAGCATCGTTAC
R:
ACAGGGTCATCCACAACAGGA
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development