MmuEX0031347 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17295812-17451644:-
Coord C1 exon
chr2:17451537-17451644
Coord A exon
chr2:17384294-17384483
Coord C2 exon
chr2:17295812-17295983
Length
190 bp
Sequences
Splice sites
3' ss Seq
AACTGATTATTTTATTGCAGCCC
3' ss Score
6.12
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTCAAGTACAAAAGAGATTTTGAAGAAAGCAAAGGCAGGGGCTTCAGCATTGTCACAGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAT
Seq A exon
CCCAGCGAAGAACCATTAAGAACTCACAGCAAGATTGAAGATGAGAAGAAATCCTGCTTAAGCCTCAGGCACGCCATTCACTATGGAAACAGACATCACCCAAAGCAACATGAGCATTGTCATCTGAAGTGGAAGCTAAGAGGTTCATCTTGGACAGCGTTGGGATATTTTTTCCTATGTACTTCTGAAG
Seq C2 exon
GTCAAATACCATGAAGATTTTGAGAAGACAAAGGGAAGAGGCTTCACTCCCGTTGTGGATGATCCTGTGACTGAACGGGTGAGGAAGAGCACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTCCAGCCACATGTTGTGGAGATGGACAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702_MULTIEX2-1/24=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.365 A=0.281 C2=0.371
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NO
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAGCAAAGGCAGGGG
R:
TGATCCCAGGTCTTCTGTCCA
Band lengths:
254-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types