MmuEX0031348 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17335310-17346261:-
Coord C1 exon
chr2:17346148-17346261
Coord A exon
chr2:17339520-17339624
Coord C2 exon
chr2:17335310-17335414
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATTCCATGTCATTTTTGTAGGTG
3' ss Score
9.03
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
GTTAAATATAAAGAAAAATTTGATAATGAAATGAAGGAAAAAAGCCACCATTACAACCCTCTGGGAAGTGCGTTTTTTAGGCAACACCAGTTCGCTGCTGTCCTGGCCAGTGAT
Seq A exon
GTGAAGTACAAGAAAGATGTTCAAGCCATGCACAAGCCAGTTTCAGATCTCCCAAATTTGTTGTTTTTAGACCATGCTCTGAAAGCCAGCAAAATGCTCAGTGGA
Seq C2 exon
TGGGAATATAAAAGGGATTTTGAAGAAAACAAAGGATTGTATCACTTTGATGCGGAGGCCCCTGAACACCTGCACCATAAAGGAAACGCCACCCTCCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702_MULTIEX2-10/24=9-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.029 C2=0.446
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(54.2=34.2)
A:
PF0088013=Nebulin=PD(37.5=25.7),PF0088013=Nebulin=PU(50.0=37.1)
C2:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCACCATTACAACCCTCTG
R:
CTGACTCTGGAGGGTGGCG
Band lengths:
178-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: