MmuEX0031343 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17318684-17322211:-
Coord C1 exon
chr2:17322101-17322211
Coord A exon
chr2:17319281-17319357
Coord C2 exon
chr2:17318684-17318794
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGCCTTTCTCCCAGTCT
3' ss Score
8.1
5' ss Seq
ATCGTGGGT
5' ss Score
2.21
Exon sequences
Seq C1 exon
AAAGAATATAAAAAAGATCTGGAAAATGAAATCAAAGGGAAAGGAATGGAGCTCAGTTCAGAAGTTCTTGATATTCAGAGAGCAAAGCGAGCATCTGAAATGGCCAGCGAG
Seq A exon
TCTCCAAGATTGCACTCCATGAAGACTCATTTGATGACTGACTTTTCCACAGTATAAAAACATCTCCAGTGAGAATC
Seq C2 exon
AAAGAATACAAAAAGGATCTGGAGTTGGAAATTAAAGGCAAGGGAATGCAAATTGACACCGATACCCTTGAAATACAACGTGCCAAAAGAGCTGCCAAGATAGCCAGCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702-'22-26,'22-25,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.611 C2=0.124
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
A:
NO
C2:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAAGGAATGGAGCTCAGT
R:
GCAGCTCTTTTGGCACGTTG
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: