MmuEX0031343 @ mm10
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17374185-17530017:-
Coord C1 exon
chr2:17529910-17530017
Coord A exon
chr2:17397654-17397730
Coord C2 exon
chr2:17374185-17374356
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGCCTTTCTCCCAGTCT
3' ss Score
8.1
5' ss Seq
ATCGTGGGT
5' ss Score
2.21
Exon sequences
Seq C1 exon
GTCAAGTACAAAAGAGATTTTGAAGAAAGCAAAGGCAGGGGCTTCAGCATTGTCACAGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAT
Seq A exon
TCTCCAAGATTGCACTCCATGAAGACTCATTTGATGACTGACTTTTCCACAGTATAAAAACATCTCCAGTGAGAATC
Seq C2 exon
GTCAAATACCATGAAGATTTTGAGAAGACAAAGGGAAGAGGCTTCACTCCCGTTGTGGATGATCCTGTGACTGAACGGGTGAGGAAGAGCACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTCCAGCCACATGTTGTGGAGATGGACAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702_MULTIEX2-18/27=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.313 A=0.444 C2=0.352
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NO
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Main Inclusion Isoform:
ENSMUST00000124270fB2674
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAGCAAAGGCAGGGG
R:
ACCCGTTCAGTCACAGGATCA
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types