MmuEX0031344 @ mm9
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17384294-17447757:-
Coord C1 exon
chr2:17447677-17447757
Coord A exon
chr2:17447027-17447116
Coord C2 exon
chr2:17384294-17384483
Length
90 bp
Sequences
Splice sites
3' ss Seq
TAAATAAATCATTTTGACAGAGA
3' ss Score
3.35
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTGGAAGGAAGGTATCACGTGAAGAGGAAAGAGAAAGAAAGCAATGAGAGAATGCCAGGCTTTCTGAGATGGATGGAAATG
Seq A exon
AGACTGACTGTAACCATGTTCAGCTGCTGACAGTGTAAAATTGAGCTGTATGGTGGACAGAAGACAAGCAGTCAAGAGAAATCCCCAAAG
Seq C2 exon
CCCAGCGAAGAACCATTAAGAACTCACAGCAAGATTGAAGATGAGAAGAAATCCTGCTTAAGCCTCAGGCACGCCATTCACTATGGAAACAGACATCACCCAAAGCAACATGAGCATTGTCATCTGAAGTGGAAGCTAAGAGGTTCATCTTGGACAGCGTTGGGATATTTTTTCCTATGTACTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.281
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGAGAGAATGCCAGGCT
R:
GCTTCCACTTCAGATGACAATGC
Band lengths:
177-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: