BtaEX0024747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105709173-105711139:-
Coord C1 exon
chr11:105711110-105711139
Coord A exon
chr11:105709369-105709646
Coord C2 exon
chr11:105709173-105709255
Length
278 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCTGATTCTAACAGGTG
3' ss Score
10.34
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
CTGGCCGGGGACCCGGAGGCCGCGCTGCGG
Seq A exon
GTGAGACGTGTGTCTTTTTGTGTGAACTACCAAAACTAGGGCTTGAAGGACACAACAGTCTTAGCATGACTCCCTCCCGTGGAGGCAACTATTGTCAACGTGCTGGGCGTTTCCTTGTCCTCGTGGTTAACATGTTGGTCTGTGCTGCCACCTAACTACCCCCGAGCGGTCACCAGAAAACACCTGGGGAGTCCAGGCAGGCTTGCACTGAGGCCGTGACACCTGCGCCCCTTGGACTCAGAGGCCCCTGGGCAGGCGAGGGAGACTTTCTCTTGCAG
Seq C2 exon
GCATTTGACCAGGCGGTGACCAAGGATGCCTGCTTGGCTGTCGGCTTCCTCCAGCGCGGAGTGGCCAACTTCCAGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(15.3=100)
A:
NO
C2:
PF134141=TPR_11=FE(45.8=100)
Main Inclusion Isoform:
ENSBTAT00000066207fB4766
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development