BtaINT0103030 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105709173-105711139:-
Coord C1 exon
chr11:105711110-105711139
Coord A exon
chr11:105709256-105711109
Coord C2 exon
chr11:105709173-105709255
Length
1854 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
ACAGACATTTCTGTCCGCAGGCA
3' ss Score
9.35
Exon sequences
Seq C1 exon
CTGGCCGGGGACCCGGAGGCCGCGCTGCGG
Seq A exon
GTGAGCCAGGGGGCCCCCAGGCTTGGTCGCAGAGACTCCACCTCAGGGGATGCAGCTCTCTGCTCCTGGTGGCCAGGGCTGGAGGAGTGGGGTGGCAATGCGTGGTGCCATAGCTGCAGGGGTGAGCCCAGGGCTCCCACCCTTCTTCCCTGATGGCGACCTGGGGACTCCCCCCACCCCAGCGTTCTGCTTCAGCGAACACCCATGCAAGTGGGACCTGTGTGTGTCCAGGGGGGACCCTGTTGAGCTGCGTCAGGGCCAGGATGGGGTCGCAAGGCTCCAGCACAGCCTCCACTTGTGGGGACCGTTTGCCCCACTCTGCTGTCCTGCAGAAAGGCCAAATGCGCACTGGCTCGGGTGCTCTTGATGGAGGTGCTAATGTACCTGCAGAGGCTCGAGGCTGGATGGGGCTGGGAGGGTTGCTGAGGTGCAGGCTTTGGGTCAGATCTTCAGCAGACACCTGTGGCCACAGCCAGGAGACAGTCTCTGGTTGGTGCCTAAACCCCAGATCTGTGTGCTCACCTGTCCCCCACCCACTCCCCAAAGCAGAACCGAGAGCCAGATGTATGCACGGGCACGCACACACCTGCCTCTGCTGAGGGCCTGGCAGGGCCATGCCTGCCCTTCAAGCCTCCAGGTTCATCACGGTGGTGCATATCCCATGGGCGATGACAGAAAGCAGTAGCACCCTGCACACTGCTTGTGTCCCCGAGGGCCCCCAGAAAAAGCCAGGTTCCCGCATCGTTCAGGCCAACGGCGACGACTACCGAAAACAGGTCCAAGGGGCCTGCCCTGTCATTCCTCACATGTGTTCGAATCTACAGTTATCTCAGCAGCAATGTCAGTGTTAAAATGTTATCCAGCAATGGGGATGCCATCACTGGACGCCACGGGGTCAGTGGAATGAGGCCAGTCCAGCCACTCCCTCCTCTAAACCTCGATTTAATCAGAGAGGGAACAGAGGTTCCCGGCCAAGGGTGTGCATGTTAAATTCTCCTCCACCCTAATTGGAGATGGAGTAGCAGAGGCATATTTGTTGGAAATTTTTAAAAAGCAGATGGAACAGCTACAATCAATAAAGCTGATTTGGACAGGGTGAGGGGAGCTGGGGCTCCGTCTCTGGCAGGAGCCCCCCAGAAGCTCCTATCTGGCCGCTCTATGTGGCAGGATAAAAGGGTTTCCCTTGTGCTGAGCGGCCACATCAGTGCCCGAGTGCTGACCCTCAACCTTGGTCAGACTCAGCTCAACAAGCCCCCACTCAGCCAGGTTTGTTAGAGTGGGACCATGACACCCTCCAGTTGCCTGTAGTTAACTTGATGGCTGCTGGATGCACTCCTTTTGCTTGTGTTTAACTGATGGCTGCTGTCCTTATAGACGACATCATTTCTGAGTTCAGTTTCAGGAAGAGCTGGGCTTCACGCACATATTAAGACTTTCGTGCTGTTCTTTTCTGATTCTAACAGGTGAGACGTGTGTCTTTTTGTGTGAACTACCAAAACTAGGGCTTGAAGGACACAACAGTCTTAGCATGACTCCCTCCCGTGGAGGCAACTATTGTCAACGTGCTGGGCGTTTCCTTGTCCTCGTGGTTAACATGTTGGTCTGTGCTGCCACCTAACTACCCCCGAGCGGTCACCAGAAAACACCTGGGGAGTCCAGGCAGGCTTGCACTGAGGCCGTGACACCTGCGCCCCTTGGACTCAGAGGCCCCTGGGCAGGCGAGGGAGACTTTCTCTTGCAGGTGACCATCATGTGGCCCGAGGGCTTCCTTGACCACTGCTGGGCATCCCCGTCTGTGACACGGGGGTGATGGGATTACAGGCCCGAGCAGTCCACAGACATTTCTGTCCGCAG
Seq C2 exon
GCATTTGACCAGGCGGTGACCAAGGATGCCTGCTTGGCTGTCGGCTTCCTCCAGCGCGGAGTGGCCAACTTCCAGCTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121:ENSBTAT00000066207:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(15.3=100)
A:
NA
C2:
PF134141=TPR_11=FE(45.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development