MmuINT0109920 @ mm10
Intron Retention
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:25092542-25095149:-
Coord C1 exon
chr2:25094748-25095149
Coord A exon
chr2:25092625-25094747
Coord C2 exon
chr2:25092542-25092624
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
ACACACATTTTTGTCCCTAGGCA
3' ss Score
10.13
Exon sequences
Seq C1 exon
GGCGGGGCGTGAGAGAGGGGCCTAAGCCTTGGGCCATCTACTCAGTTTCAAGGACCGACTGTCACAACTCCAGTTGTCTTGCTACCAGCTGCTTCTCATTGCTGTCCCGGTCCCCTTGGCCCTGGCCTACGGCCTCCCAGCTTCTGTGGGGCACCCTCCTCCTGTCCCACGCGCTCCAGCTAGAATCGCTAACTTCCTTCGCCTCAAAGCAGGCGTCCCCGCTCCATGAGCTCTCTAGGGGATCAGATACGGGACTGGCACCGGGGTGTGCTGGCCGTGGCACGCGAAGACTGGGACTCTGCGCTGTGCTTCTTCTCAGATGTCCGAGAGCCGCTGGCTAGGATGTACTTTAACAGGGGCTGTGTGCATCTGATGGCAGGGGATCCCGAGGCTGCGCTGCGG
Seq A exon
GTAAGCACCCCAGGACTGGATAACAGATTCCCCTCTCACATCCCTGGTGGAGGCTTTAGGGGAATGCAGATGAAGATGTGACTGCGAACATAAAACCTTATCTTCCAATGGGCATCCTGGAAAAAGACGCTCTTCCGCACCTTATAGTCAACATAGAAGAAGGGGAGGAATCCCTGCCCTTTACCCTGTCATTTACGTAGAGATTGTTCAACTAATGTCCTCTCTTAGTGCCTGCCTGAGGCAGGTTGGAGCTTTGTGGTTAGAAGACCCCTCTTTTTGTTGAGACCAGAATGGGAAGCAGGGCGCCTTCAGTCTCTATAGCCATATAAGCCAAATGCGGCAACTGTACCAGACCTGGCCTGCCCAGGCTCTCTGGTGCTCAGGACTGAGGAAGGAGCATACCCGAAGGCAGGCTGGTGGCTGGGTCAGAGCAGTCAGGGGCTCTGCACGTCCTCTGATAGTGTGCATTTCAGCAGATGCTTGTGATGGGATGGTGGCACACAGTCTGTCATTCCGGTTCTGAGTGAGCACTCACATGAATCTCCACCTGCTTCTCAAAGCAGACCTACTCAGGGGAGCACACTGTAGAGTGAGCATCAGGGCATCCCCCCTTCATGTTCACCATTCCTGGGTGTATGATAGAAGCCCTCAGCACTCTGCCTACAACGCAGACCTACCTGGACACCACAGATGGAAAGCAAAGACACCCAAGACCAAGGGTGAGAGCAGAAACCTGGGCTGTGTGGAGATGGTCTCTTTATTATTTCTTTCTGGAAGCCTTAATTATTTATTTATTTACATGTGTGTATAAATCAGGAGGAAACTTGTGGGAGTCAGTTTTCTCTTTCCCATGTGGAACCTAGTGATCAAACGCAGGTCATTAGGCATGGTGGCAAGTATCCTTACCCACTGAGCCATCTTGCCAGCTCTCTTCTATTACGTCTTACATATTTATCTGTACCTATTGTTTCTTCATTAGAAGGGTTTTGTTTGAGCCACGAATAGTGATGCCTGCCTTTAATCCCTCTGGAGACAGAGGTAGGCTCTGCACATCTGAAGTTTGAAGCCAACAGAGGCAAACAGGTCTCTGAGTTTGAGGCTAGCCTAGTCTACAAAGTGAGTTCCAGGAAAGTTCCAGTTCCAGGGCTACACAGAGAAATTCAGTCTTAAAAACCAAAACCAAGCCAAACCAAAAAACAAAAAGGTTATTGTTCAGGAAAGGGAACGTAATGATCTGTTACCAGCTGGTTCAACAGTGAGTAAGTCCCACGCTCCCCTCCTCACACTGTAACTAGAGAGTTTGAAATGCTCTATCATAAGAAGAAGAAGAGGCACTGCCTTGAGTCAATAAAACTTACTTGTGTACAAGCACAGGCACACTGGCCAGACCTGGAAACGTTGAGAAGTGGGTGGTATAACTGACTGCAATAAGGAAATCTAAGTGTACAGGTCTCACGAGGTTGCACTTGAACGTGTCGGTGTGAAGCTGTAGTGTTGGATGGATCTGTGAGCAGCCATGCCATTTCCTGGACATGAGAAAGCTTCAAAGTCAGACCCAGCTCACAGTCAGCCCTCGCCTGGCCAGGCAAGGTGGTAGGAAACCGCAGCAGGTGCCTGTGTACAGAAGACTTCTGTGTTCTGATTCTAATCCACACACTTGTGTGCCGTTTCGTGGGAACTACCAAAGGAGATTTAAAAACAGTTATTAATGGATTTTATGTATGTGAGTTCTTCCATTACAGATGGTTCTGAAACACCATGAGCTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCCTCTCTAGCTCCTGCAAAGAGATTTTTTAAAGTCCAAAATTTACACAGTCCTGTCTCCCAGAGATGACTTTTATTGATACTGGGGGGCGTTTTCTTCTAGCTCTGTGCTCCTTGTGGAAGAATTGGGTTTCTATGCCATGGGGCTGTGCCCTGAGTCTGTTGTGAGGTGCTTGGGGCAGCTGAGAAATCTATGCAGTAACACACTTTCCAGGCTTTAACTGGACAGTGGTCCTCAGCTGTTGATACATTTCCATGTATGTTTGTGGCTTTGGGTTCCTCAGTTACTGAGTTTAGTGTTCCACACACATTTTTGTCCCTAG
Seq C2 exon
GCATTTGACCAAGCAGTGACTAAGGACACCTGCATGGCTGTTGGCTTCCTCCAGCGGGGAGTGGCCAATTTCCAGCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805:ENSMUST00000044018:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(35.7=42.4)
A:
NA
C2:
PF134141=TPR_11=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types