BtaEX0024882 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003650 | NR4A2
Description
Bos taurus nuclear receptor subfamily 4, group A, member 2 (NR4A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076208]
Coordinates
chr2:40009568-40012838:+
Coord C1 exon
chr2:40009568-40009668
Coord A exon
chr2:40011367-40011490
Coord C2 exon
chr2:40011973-40012838
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTGTCTTCATTTCAGGGA
3' ss Score
11.04
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
CCCTCTCGCCCACCCCTCCCCGGCCCTGCCACCCAGACTCCCGAAGGGAACTACACTTCAGCCGAGTTGAATGAATGAAGAGAGACGCAGAGAACTCCTAA
Seq A exon
GGAGGCGATCTGACAGGCTGGGCTCTCCACTGCTCTTCTAAAAATCTTGGAAACTTTGTCCTTCATTGAATTACGACACTGTCCACCTTTAATTTTCTCCAAAACGCCTGTAACTCGGCTGAAG
Seq C2 exon
CCATGCCTTGTGTTCAGGCGCAGTATGGGTCCTCGCCTCAAGGAGCCAGCCCCGCTTCTCAGAGCTACAGTTACCACTCTTCGGGAGAATACAGCTCCGATTTCTTAACTCCAGAGTTTGTCAAGTTTAGCATGGACCTCACCAACACTGAAATCACTGCCACCACTTCTCTCCCCAGCTTCAGTACCTTTATGGACAACTACAGCACAGGCTACGACGTCAAGCCACCTTGCTTGTACCAAATGCCCCTGTCCGGACAGCAGTCCTCCATTAAGGTAGAAGACATTCAGATGCACAACTACCAGCAACACAGCCACCTGCCCCCACAGTCCGAGGAGATGATGCCGCACTCCGGGTCCGTTTACTACAAGCCCTCCTCGCCCCCGACGCCCACCACCCCGGGCTTCCAGGTGCAGCACAGCCCCATGTGGGACGACCCAGGCTCCCTCCACAACTTCCACCAGAACTACGTGGCCACTACCCACATGATCGAACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003650-'4-2,'4-1,7-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.507
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(38.6=9.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAACTACACTTCAGCCGA
R:
AGGTACTGAAGCTGGGGAGAG
Band lengths:
246-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development