MmuEX6101378 @ mm10
Exon Skipping
Gene
ENSMUSG00000026826 | Nr4a2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:MGI Symbol;Acc:MGI:1352456]
Coordinates
chr2:57111576-57115038:-
Coord C1 exon
chr2:57114718-57115038
Coord A exon
chr2:57112951-57113072
Coord C2 exon
chr2:57111576-57112441
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTGTCTGTATTTCAGGGA
3' ss Score
11.23
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGGGAGCGCGGCGGCTCGGCGATTGGACCGCGGGCCGCTGACGCGGGCTGACGCGCGCAGACTTTAGGTGCATGTTGGCAGCAGCAGCTCGAGCCACATAAACAAAGGCACATTGGCGGCCAGGGCCAGTCCGCCCCGCGGCTCCGCACAGCTCCGCGTCCCTCTCTCCGGCCCCGCTGGCTGCCTCCCTCTCCTGCGGCCGGGCTGGCTGCGTGTGGCTCTCCGCGCCCCGCTTCCGCAGCGCTCCCGCGGACCCGGGCTCCTCTGCTCCCGGAGGGAACTGCACTTCGGCGGAGTTGAATGAATGAAGAGAGCGGACAA
Seq A exon
GGAGATCTGACGGGCTGGATTCCCAATAGCTCTTTTTTAAAATCTTGGAAACTTTGTCCTTCGCTGAATTACGACACTGTCCACCTTTAATTTCCTCGAAAACTCCAATAACTCTGCTGAAG
Seq C2 exon
CCATGCCTTGTGTTCAGGCGCAGTATGGGTCCTCGCCTCAAGGAGCCAGCCCCGCTTCTCAGAGCTACAGTTACCACTCTTCGGGAGAATACAGCTCCGATTTCTTAACTCCAGAGTTTGTCAAGTTTAGCATGGACCTCACCAACACTGAAATTACTGCCACCACTTCTCTCCCCAGCTTCAGTACCTTTATGGACAACTACAGCACAGGCTACGACGTCAAGCCACCTTGCTTGTACCAAATGCCCCTGTCCGGACAGCAGTCCTCCATTAAGGTAGAAGACATTCAGATGCACAACTACCAGCAACACAGCCACCTGCCCCCTCAGTCCGAGGAGATGATGCCACACAGCGGGTCGGTTTACTACAAGCCCTCTTCGCCCCCGACACCCAGCACCCCGAGCTTCCAGGTGCAGCATAGCCCGATGTGGGACGATCCGGGCTCCCTTCACAACTTCCACCAGAACTACGTGGCCACTACGCATATGATCGAGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026826-'1-11,'1-10,7-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.529
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0010513=zf-C4=PU(38.6=12.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCGGCGGAGTTGAATGA
R:
GCCTGTGCTGTAGTTGTCCAT
Band lengths:
250-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types