BtaEX0024883 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003650 | NR4A2
Description
Bos taurus nuclear receptor subfamily 4, group A, member 2 (NR4A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076208]
Coordinates
chr2:40011367-40013752:+
Coord C1 exon
chr2:40011367-40011490
Coord A exon
chr2:40011973-40012838
Coord C2 exon
chr2:40013623-40013752
Length
866 bp
Sequences
Splice sites
3' ss Seq
TTACCCTGTTTCATTTCCAGCCA
3' ss Score
10.31
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAGGCGATCTGACAGGCTGGGCTCTCCACTGCTCTTCTAAAAATCTTGGAAACTTTGTCCTTCATTGAATTACGACACTGTCCACCTTTAATTTTCTCCAAAACGCCTGTAACTCGGCTGAAG
Seq A exon
CCATGCCTTGTGTTCAGGCGCAGTATGGGTCCTCGCCTCAAGGAGCCAGCCCCGCTTCTCAGAGCTACAGTTACCACTCTTCGGGAGAATACAGCTCCGATTTCTTAACTCCAGAGTTTGTCAAGTTTAGCATGGACCTCACCAACACTGAAATCACTGCCACCACTTCTCTCCCCAGCTTCAGTACCTTTATGGACAACTACAGCACAGGCTACGACGTCAAGCCACCTTGCTTGTACCAAATGCCCCTGTCCGGACAGCAGTCCTCCATTAAGGTAGAAGACATTCAGATGCACAACTACCAGCAACACAGCCACCTGCCCCCACAGTCCGAGGAGATGATGCCGCACTCCGGGTCCGTTTACTACAAGCCCTCCTCGCCCCCGACGCCCACCACCCCGGGCTTCCAGGTGCAGCACAGCCCCATGTGGGACGACCCAGGCTCCCTCCACAACTTCCACCAGAACTACGTGGCCACTACCCACATGATCGAACAGAGGAAAACGCCGGTCTCCCGCCTTTCCCTCTTCTCCTTTAAGCAGTCGCCCCCCGGAACCCCCGTGTCTAGCTGCCAGATGCGCTTCGATGGGCCCCTGCACGTCCCCATGAACCCGGAGCCAGCGGGCAGCCACCACGTGGTGGACGGGCAGACCTTCGCCGTGCCCAACCCCATCCGAAAGCCCGCGTCCATGGGCTTCCCTGGCCTGCAGATCGGCCACGCGTCGCAGCTGCTCGATACGCAGGTGCCCTCCCCGCCGTCGCGGGGCTCCCCCTCCAATGAAGGGCTGTGCGCTGTGTGCGGTGACAACGCGGCCTGCCAGCACTACGGCGTGCGCACCTGTGAGGGCTGCAAAGGGTTCTTTAAG
Seq C2 exon
CGCACGGTGCAAAAAAACGCGAAATACGTGTGTTTAGCAAATAAAAACTGCCCAGTGGACAAGCGGCGCAGGAATCGCTGTCAGTACTGCCGGTTTCAGAAGTGCCTGGCTGTTGGGATGGTCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003650-'7-4,'7-2,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.507 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0010513=zf-C4=PU(38.6=9.4)
C2:
PF0010513=zf-C4=PD(58.6=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCGATCTGACAGGCT
R:
CTTCTTTGACCATCCCAACAGC
Band lengths:
254-1120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development