DreEX0051455 @ danRer10
Exon Skipping
Gene
ENSDARG00000044532 | nr4a2b
Description
nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
Coordinates
chr6:12227221-12229637:+
Coord C1 exon
chr6:12227221-12227353
Coord A exon
chr6:12228007-12228857
Coord C2 exon
chr6:12229508-12229637
Length
851 bp
Sequences
Splice sites
3' ss Seq
TGAGTTTTCTAACACTGCAGCCA
3' ss Score
5.14
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGTCTTCGCTTGCAGTCGAAGGAGTAAGGTGCTCAACGGCATTGGTTCTATACATGCAAACCTAACTTCTGGGCTATCAGCAGGAACACCTACATGGATACATAATTTGCAACTTATTCGACAGCGTCTTGAG
Seq A exon
CCATGCCCTGCGTCCAGGCTCAGTATGGGACATCACCTCCAGGAGCCAGCCCTGCATCTCAGAGTTACAGCTACAACACCACGGGAGAGTACAACTGCGACTTCTTAACGCCGGAGTTTGTCAAGTTTAGCATGGACCTGACTAACGCAGAGATAGCTGTCACTTCTTCGCTCCCCAGTTTCAGCACCTTCGTGGACACCTACAACTCCAACTACGACGTGAAGCCTCCCTGCCTCTACCAAATGGCCCACTCTGGGGATCAGCTGTCCATCAAGGTGGAGGAGATACCCGCACACGGCTACCATCAGCAGCAGCACCATCAGCCGCATCAGGCTGAGGAGAGCATACCCCATACCGGAGCTATATACTATAAACCATCCACTCCAAACATCTCCCAGTCCCCCAGTTACCCAACGGCTCCACATCATACGTGGGAAGACACCGGATCCCTTCACAGCTTTCACCAGAACTACCTGGCGACGTCACATATTATGGACCAGCAGCGGAAAAACGCGATGTCTCGGTTATTCTCGTTCAAGCAGTCTCCGGTTGACACGCCGATGCCAAGCTGCCAGATGCGCTTCGATGGATCCCTGCACGTGTCCATGGGCCCGGACACCGCACATCGCGCGCTGGACAGTTTTGCTTTGCCGGCTCCTCCGAGGAAACAGCACGGTGTGGGTTTATCCCATTCCCTAAACGTCGGGCACCCCTTACTGGAAAGCCCGGTGGCATCACCGCAGGCTAGAGGATCTCCGTCCAGCGAGGGTTTGTGCGCTGTGTGCGGGGACAACGCAGCCTGTCAGCACTACGGAGTGCGCACATGCGAGGGGTGCAAAGGATTCTTTAAG
Seq C2 exon
CGCACGGTGCAGAAAAACGCCAAATACGTTTGTCTGGCGAACAAAAACTGTCCTGTGGACAAAAGACGGCGAAATCGATGCCAATATTGCCGTTTTCAAAAGTGCCTGGTCGTTGGGATGGTAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044532_MULTIEX1-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.403 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0010513=zf-C4=PU(38.6=9.5)
C2:
PF0010513=zf-C4=PD(58.6=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTCGCTTGCAGTCGAAG
R:
TTCCTTTACCATCCCAACGACC
Band lengths:
262-1113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]