BtaEX0025322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57817816-57826114:+
Coord C1 exon
chr3:57817816-57817899
Coord A exon
chr3:57819188-57819244
Coord C2 exon
chr3:57825946-57826114
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTTTCGCCATGAGACA
3' ss Score
-7.34
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GGAAAATTTGGGCTTGGGCGGCGGAGGGTCGGTTACCGCGGGTGGCTTTAAGGGTCCCGGGTTGGGGCCGTGGCCGTGGCCTTG
Seq A exon
ACATGTGGGGTGTTTGCTCCCTGAGGAGGAATTGAACCCATACTGCCTGCTTGGAAG
Seq C2 exon
GTTTCAGCTTATGTGGAGAACTTGCTGTGGAAGCCACCGATAAATCCATTTAATTTATGGAGGAGACTGCAAATGATGGAAGTCATTCAGAAGAACTCTTTTCCCATTTTGAAAGTAGATCAGAGAAAGAAGGTTTACCACAGGATGCCAGTGAAAGTCATCTCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907_MULTIEX1-1/10=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.947
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCGCGGGTGGCTTTAAG
R:
CCATCATTTGCAGTCTCCTCCA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development