BtaEX0025570 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005365 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr5:80537389-80544666:+
Coord C1 exon
chr5:80537389-80537584
Coord A exon
chr5:80539349-80539423
Coord C2 exon
chr5:80544512-80544666
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTGATATTTCTCCCAGCAGTCT
3' ss Score
4.34
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAGAAGGGCAAAACACATCGTGATGCATGAGGACTTCGACTCACTGAGCTATGACTCTGATATCGCCTTGATCCAACTGAGCTCTGCCCTAGAATTCAACTCAGTGGTGAGGCCAGTATGTCTTCCACACAGCTTGGAGCCTCTGTTTTCTTCTGAGATTTGTGTTGTGACTGGCTGGGGAAGTGCTAATAAAG
Seq A exon
TCTTGAATCCAGCTTGTGATTCAGCCAGCCTGGCATTTCCCATGATGTACTCTGCATAGAAGTTGAATAAGCAAG
Seq C2 exon
ATGGTGGTCTAGCAAGTCGCTTACAGCAGATTCAAGTGCCTGTGTTAGAAAGAGAGGTCTGCGAACGCACTTACTATTCAGCCCATCCAGGAGGAATCTCAGAGAAGATGATCTGTGCTGGCTTTGCAGCATCTGGAGAGAAAGATGTGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005365-'32-39,'32-38,33-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(27.9=100)
A:
PF0008921=Trypsin=PD(5.6=40.0)
C2:
PF0008921=Trypsin=FE(21.9=100)
Main Inclusion Isoform:
ENSBTAT00000007060fB4937
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCTTGGAGCCTCTGTTT
R:
GAGATTCCTCCTGGATGGGCT
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development