BtaEX0025571 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005365 | OVCH1
Description
ovochymase 1 [Source:HGNC Symbol;Acc:HGNC:23080]
Coordinates
chr5:80537389-80552694:+
Coord C1 exon
chr5:80537389-80537584
Coord A exon
chr5:80544512-80544666
Coord C2 exon
chr5:80552538-80552694
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTTCTCAATCTACTTTTTAGATG
3' ss Score
8.04
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGAGAAGGGCAAAACACATCGTGATGCATGAGGACTTCGACTCACTGAGCTATGACTCTGATATCGCCTTGATCCAACTGAGCTCTGCCCTAGAATTCAACTCAGTGGTGAGGCCAGTATGTCTTCCACACAGCTTGGAGCCTCTGTTTTCTTCTGAGATTTGTGTTGTGACTGGCTGGGGAAGTGCTAATAAAG
Seq A exon
ATGGTGGTCTAGCAAGTCGCTTACAGCAGATTCAAGTGCCTGTGTTAGAAAGAGAGGTCTGCGAACGCACTTACTATTCAGCCCATCCAGGAGGAATCTCAGAGAAGATGATCTGTGCTGGCTTTGCAGCATCTGGAGAGAAAGATGTGGGTCAG
Seq C2 exon
GGAGATTCTGGTGGACTGCTAGTGTGTAAACATGAAAAAGGTCCCTTTGTCCTCTATGGCATTGTCAGCTGGGGAGCTGGCTGTGACCAACCAAGGAAGCCAGGTGTATTTGCCAGAGTGAGTGTCTTCCTGGACTGGATTCAATCCAAAATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005365-'32-43,'32-39,35-43
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(27.9=100)
A:
PF0008921=Trypsin=FE(21.9=100)
C2:
PF0008921=Trypsin=PD(19.7=86.8)
Main Skipping Isoform:
ENSBTAT00000007060fB4937
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCCTTGATCCAACTGAGC
R:
TGGCAAATACACCTGGCTTCC
Band lengths:
248-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development